Gene : Bradi3g44810 B. distachyon v3.1
Defline:  (1 of 158) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  5545
Name:  ? Bradi3g44810 Secondary Identifier:  ? PAC:32812429
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g44810 0.5kb upstream 0.5kb upstream 3198 true Bd3: 46513415-46516612 Brachypodium distachyon
Bradi3g44810 0.5kb upstream 0.5kb upstream 500 false Bd3: 46516113-46516612 Brachypodium distachyon
Bradi3g44810 0.5kb downstream 0.5kb downstream 3198 true Bd3: 46512915-46516112 Brachypodium distachyon
Bradi3g44810 0.5kb downstream 0.5kb downstream 500 false Bd3: 46512915-46513414 Brachypodium distachyon
Bradi3g44810 1.0kb upstream 1.0kb upstream 3698 true Bd3: 46513415-46517112 Brachypodium distachyon
Bradi3g44810 1.0kb upstream 1.0kb upstream 1000 false Bd3: 46516113-46517112 Brachypodium distachyon
Bradi3g44810 1.0kb downstream 1.0kb downstream 3698 true Bd3: 46512415-46516112 Brachypodium distachyon
Bradi3g44810 1.0kb downstream 1.0kb downstream 1000 false Bd3: 46512415-46513414 Brachypodium distachyon
Bradi3g44810 2.0kb upstream 2.0kb upstream 4698 true Bd3: 46513415-46518112 Brachypodium distachyon
Bradi3g44810 2.0kb upstream 2.0kb upstream 2000 false Bd3: 46516113-46518112 Brachypodium distachyon
Bradi3g44810 2.0kb downstream 2.0kb downstream 4698 true Bd3: 46511415-46516112 Brachypodium distachyon
Bradi3g44810 2.0kb downstream 2.0kb downstream 2000 false Bd3: 46511415-46513414 Brachypodium distachyon
Bradi3g44810 5.0kb upstream 5.0kb upstream 7698 true Bd3: 46513415-46521112 Brachypodium distachyon
Bradi3g44810 5.0kb upstream 5.0kb upstream 5000 false Bd3: 46516113-46521112 Brachypodium distachyon
Bradi3g44810 5.0kb downstream 5.0kb downstream 7698 true Bd3: 46508415-46516112 Brachypodium distachyon
Bradi3g44810 5.0kb downstream 5.0kb downstream 5000 false Bd3: 46508415-46513414 Brachypodium distachyon
Bradi3g44810 10.0kb upstream 10.0kb upstream 12698 true Bd3: 46513415-46526112 Brachypodium distachyon
Bradi3g44810 10.0kb upstream 10.0kb upstream 10000 false Bd3: 46516113-46526112 Brachypodium distachyon
Bradi3g44810 10.0kb downstream 10.0kb downstream 12698 true Bd3: 46503415-46516112 Brachypodium distachyon
Bradi3g44810 10.0kb downstream 10.0kb downstream 10000 false Bd3: 46503415-46513414 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573292 5269 Grass View MSA
122049070 5273 Angiosperm View MSA
121311235 5274 Embryophyte View MSA
123348556 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.941        
cufflinks 9.471        
cufflinks 13.684     High  
cufflinks 10.338        
cufflinks 1.612        
cufflinks 8.019        
cufflinks 7.474        
cufflinks 5.838        
cufflinks 6.59        
cufflinks 7.734        
cufflinks 8.236        
cufflinks 7.74        
cufflinks 9.929     High  
cufflinks 7.942     High  
cufflinks 8.911     High  
cufflinks 9.088        
cufflinks 4.566        
cufflinks 0.214       Low
cufflinks 1.921        
cufflinks 0.217       Low
cufflinks 2.308        
cufflinks 11.638     High  
cufflinks 5.817        
cufflinks 6.875        
cufflinks 7.345        
cufflinks 15.226     High High
cufflinks 6.321        
cufflinks 12.774     High  
cufflinks 12.7     High  
cufflinks 5.083        

0 Strain