Gene : Bradi3g53020 B. distachyon v3.1
Defline:  (1 of 1) 3.4.22.54 - Calpain-3 / Muscle-specific calcium-activated neutral protease 3 Genomic Order:  6580
Name:  ? Bradi3g53020 Secondary Identifier:  ? PAC:32820774
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g53020 0.5kb upstream 0.5kb upstream 15874 true Bd3: 53555054-53570927 Brachypodium distachyon
Bradi3g53020 0.5kb upstream 0.5kb upstream 500 false Bd3: 53555054-53555553 Brachypodium distachyon
Bradi3g53020 0.5kb downstream 0.5kb downstream 15874 true Bd3: 53555554-53571427 Brachypodium distachyon
Bradi3g53020 0.5kb downstream 0.5kb downstream 500 false Bd3: 53570928-53571427 Brachypodium distachyon
Bradi3g53020 1.0kb upstream 1.0kb upstream 16374 true Bd3: 53554554-53570927 Brachypodium distachyon
Bradi3g53020 1.0kb upstream 1.0kb upstream 1000 false Bd3: 53554554-53555553 Brachypodium distachyon
Bradi3g53020 1.0kb downstream 1.0kb downstream 16374 true Bd3: 53555554-53571927 Brachypodium distachyon
Bradi3g53020 1.0kb downstream 1.0kb downstream 1000 false Bd3: 53570928-53571927 Brachypodium distachyon
Bradi3g53020 2.0kb upstream 2.0kb upstream 17374 true Bd3: 53553554-53570927 Brachypodium distachyon
Bradi3g53020 2.0kb upstream 2.0kb upstream 2000 false Bd3: 53553554-53555553 Brachypodium distachyon
Bradi3g53020 2.0kb downstream 2.0kb downstream 17374 true Bd3: 53555554-53572927 Brachypodium distachyon
Bradi3g53020 2.0kb downstream 2.0kb downstream 2000 false Bd3: 53570928-53572927 Brachypodium distachyon
Bradi3g53020 5.0kb upstream 5.0kb upstream 20374 true Bd3: 53550554-53570927 Brachypodium distachyon
Bradi3g53020 5.0kb upstream 5.0kb upstream 5000 false Bd3: 53550554-53555553 Brachypodium distachyon
Bradi3g53020 5.0kb downstream 5.0kb downstream 20374 true Bd3: 53555554-53575927 Brachypodium distachyon
Bradi3g53020 5.0kb downstream 5.0kb downstream 5000 false Bd3: 53570928-53575927 Brachypodium distachyon
Bradi3g53020 10.0kb upstream 10.0kb upstream 25374 true Bd3: 53545554-53570927 Brachypodium distachyon
Bradi3g53020 10.0kb upstream 10.0kb upstream 10000 false Bd3: 53545554-53555553 Brachypodium distachyon
Bradi3g53020 10.0kb downstream 10.0kb downstream 25374 true Bd3: 53555554-53580927 Brachypodium distachyon
Bradi3g53020 10.0kb downstream 10.0kb downstream 10000 false Bd3: 53570928-53580927 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570683 5269 Grass View MSA
122043542 5273 Angiosperm View MSA
121345747 5274 Embryophyte View MSA
123380263 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.043        
cufflinks 10.806     High  
cufflinks 10.164        
cufflinks 6.937        
cufflinks 1.925       Low
cufflinks 9.636     High  
cufflinks 8.654        
cufflinks 7.997        
cufflinks 9.823     High  
cufflinks 4.551        
cufflinks 6.522        
cufflinks 11.164     High  
cufflinks 7.302     High  
cufflinks 4.795        
cufflinks 5.009        
cufflinks 9.268        
cufflinks 3.189        
cufflinks 10.512        
cufflinks 6.351        
cufflinks 0.927       Low
cufflinks 3.442        
cufflinks 11.646     High High
cufflinks 7.736        
cufflinks 7.376        
cufflinks 6.479        
cufflinks 8.275        
cufflinks 8.159        
cufflinks 7.973        
cufflinks 8.714        
cufflinks 9.001        

0 Strain