Gene : Bradi3g53987 B. distachyon v3.1
Defline:  (1 of 2) PTHR10108//PTHR10108:SF908 - METHYLTRANSFERASE Genomic Order:  6700
Name:  ? Bradi3g53987 Secondary Identifier:  ? PAC:32823407
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-2541 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g53987 0.5kb upstream 0.5kb upstream 6186 true Bd3: 54321467-54327652 Brachypodium distachyon
Bradi3g53987 0.5kb upstream 0.5kb upstream 500 false Bd3: 54321467-54321966 Brachypodium distachyon
Bradi3g53987 0.5kb downstream 0.5kb downstream 6186 true Bd3: 54321967-54328152 Brachypodium distachyon
Bradi3g53987 0.5kb downstream 0.5kb downstream 500 false Bd3: 54327653-54328152 Brachypodium distachyon
Bradi3g53987 1.0kb upstream 1.0kb upstream 6686 true Bd3: 54320967-54327652 Brachypodium distachyon
Bradi3g53987 1.0kb upstream 1.0kb upstream 1000 false Bd3: 54320967-54321966 Brachypodium distachyon
Bradi3g53987 1.0kb downstream 1.0kb downstream 6686 true Bd3: 54321967-54328652 Brachypodium distachyon
Bradi3g53987 1.0kb downstream 1.0kb downstream 1000 false Bd3: 54327653-54328652 Brachypodium distachyon
Bradi3g53987 2.0kb upstream 2.0kb upstream 7686 true Bd3: 54319967-54327652 Brachypodium distachyon
Bradi3g53987 2.0kb upstream 2.0kb upstream 2000 false Bd3: 54319967-54321966 Brachypodium distachyon
Bradi3g53987 2.0kb downstream 2.0kb downstream 7686 true Bd3: 54321967-54329652 Brachypodium distachyon
Bradi3g53987 2.0kb downstream 2.0kb downstream 2000 false Bd3: 54327653-54329652 Brachypodium distachyon
Bradi3g53987 5.0kb upstream 5.0kb upstream 10686 true Bd3: 54316967-54327652 Brachypodium distachyon
Bradi3g53987 5.0kb upstream 5.0kb upstream 5000 false Bd3: 54316967-54321966 Brachypodium distachyon
Bradi3g53987 5.0kb downstream 5.0kb downstream 10686 true Bd3: 54321967-54332652 Brachypodium distachyon
Bradi3g53987 5.0kb downstream 5.0kb downstream 5000 false Bd3: 54327653-54332652 Brachypodium distachyon
Bradi3g53987 10.0kb upstream 10.0kb upstream 15686 true Bd3: 54311967-54327652 Brachypodium distachyon
Bradi3g53987 10.0kb upstream 10.0kb upstream 10000 false Bd3: 54311967-54321966 Brachypodium distachyon
Bradi3g53987 10.0kb downstream 10.0kb downstream 15686 true Bd3: 54321967-54337652 Brachypodium distachyon
Bradi3g53987 10.0kb downstream 10.0kb downstream 10000 false Bd3: 54327653-54337652 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041479 5273 Angiosperm View MSA
124575415 5269 Grass View MSA
121345470 5274 Embryophyte View MSA
123426805 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.851        
cufflinks 5.619        
cufflinks 5.812        
cufflinks 6.4        
cufflinks 3.67        
cufflinks 5.24        
cufflinks 4.917        
cufflinks 4.22        
cufflinks 4.962        
cufflinks 5.601        
cufflinks 0.884       Low
cufflinks 4.793        
cufflinks 0.801       Low
cufflinks 0.702       Low
cufflinks 2.236        
cufflinks 5.129        
cufflinks 8.22        
cufflinks 10.524       High
cufflinks 7.894        
cufflinks 1.171       Low
cufflinks 7.257        
cufflinks 5.813        
cufflinks 4.14        
cufflinks 4.935        
cufflinks 5.527        
cufflinks 5.867        
cufflinks 0.882       Low
cufflinks 5.516        
cufflinks 5.745        
cufflinks 10.023       High

0 Strain