Gene : Bradi3g49620 B. distachyon v3.1
Defline:  (1 of 2) PTHR23088//PTHR23088:SF31 - NITRILASE-RELATED Genomic Order:  6159
Name:  ? Bradi3g49620 Secondary Identifier:  ? PAC:32821761
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ASPARAGINE-DEG1-PWY Brachypodium distachyon pathologic  
Bdistachyon ASPSYNII-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g49620 0.5kb upstream 0.5kb upstream 4991 true Bd3: 50689727-50694717 Brachypodium distachyon
Bradi3g49620 0.5kb upstream 0.5kb upstream 500 false Bd3: 50689727-50690226 Brachypodium distachyon
Bradi3g49620 0.5kb downstream 0.5kb downstream 4991 true Bd3: 50690227-50695217 Brachypodium distachyon
Bradi3g49620 0.5kb downstream 0.5kb downstream 500 false Bd3: 50694718-50695217 Brachypodium distachyon
Bradi3g49620 1.0kb upstream 1.0kb upstream 5491 true Bd3: 50689227-50694717 Brachypodium distachyon
Bradi3g49620 1.0kb upstream 1.0kb upstream 1000 false Bd3: 50689227-50690226 Brachypodium distachyon
Bradi3g49620 1.0kb downstream 1.0kb downstream 5491 true Bd3: 50690227-50695717 Brachypodium distachyon
Bradi3g49620 1.0kb downstream 1.0kb downstream 1000 false Bd3: 50694718-50695717 Brachypodium distachyon
Bradi3g49620 2.0kb upstream 2.0kb upstream 6491 true Bd3: 50688227-50694717 Brachypodium distachyon
Bradi3g49620 2.0kb upstream 2.0kb upstream 2000 false Bd3: 50688227-50690226 Brachypodium distachyon
Bradi3g49620 2.0kb downstream 2.0kb downstream 6491 true Bd3: 50690227-50696717 Brachypodium distachyon
Bradi3g49620 2.0kb downstream 2.0kb downstream 2000 false Bd3: 50694718-50696717 Brachypodium distachyon
Bradi3g49620 5.0kb upstream 5.0kb upstream 9491 true Bd3: 50685227-50694717 Brachypodium distachyon
Bradi3g49620 5.0kb upstream 5.0kb upstream 5000 false Bd3: 50685227-50690226 Brachypodium distachyon
Bradi3g49620 5.0kb downstream 5.0kb downstream 9491 true Bd3: 50690227-50699717 Brachypodium distachyon
Bradi3g49620 5.0kb downstream 5.0kb downstream 5000 false Bd3: 50694718-50699717 Brachypodium distachyon
Bradi3g49620 10.0kb upstream 10.0kb upstream 14491 true Bd3: 50680227-50694717 Brachypodium distachyon
Bradi3g49620 10.0kb upstream 10.0kb upstream 10000 false Bd3: 50680227-50690226 Brachypodium distachyon
Bradi3g49620 10.0kb downstream 10.0kb downstream 14491 true Bd3: 50690227-50704717 Brachypodium distachyon
Bradi3g49620 10.0kb downstream 10.0kb downstream 10000 false Bd3: 50694718-50704717 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578315 5269 Grass View MSA
122043736 5273 Angiosperm View MSA
121347314 5274 Embryophyte View MSA
123380526 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.451        
cufflinks 4.716       Low
cufflinks 5.18        
cufflinks 4.606       Low
cufflinks 5.043        
cufflinks 6.113        
cufflinks 4.964        
cufflinks 7.997        
cufflinks 6.692        
cufflinks 12.328     High High
cufflinks 15.479     High High
cufflinks 7.653        
cufflinks 10.026     High  
cufflinks 13.467     High High
cufflinks 8.983     High  
cufflinks 6.673        
cufflinks 7.986        
cufflinks 13.474     High High
cufflinks 6.369        
cufflinks 5.361        
cufflinks 8.346        
cufflinks 12.157     High High
cufflinks 6.225        
cufflinks 5.518        
cufflinks 4.292       Low
cufflinks 5.544        
cufflinks 10.457     High  
cufflinks 6.968        
cufflinks 10.256        
cufflinks 4.815       Low

0 Strain