Gene : Bradi4g29887 B. distachyon v3.1
Defline:  (1 of 1) PTHR11361:SF89 - DNA MISMATCH REPAIR PROTEIN MSH6 Genomic Order:  3844
Name:  ? Bradi4g29887 Secondary Identifier:  ? PAC:32786960
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g29887 0.5kb upstream 0.5kb upstream 12465 true Bd4: 35454120-35466584 Brachypodium distachyon
Bradi4g29887 0.5kb upstream 0.5kb upstream 500 false Bd4: 35454120-35454619 Brachypodium distachyon
Bradi4g29887 0.5kb downstream 0.5kb downstream 12465 true Bd4: 35454620-35467084 Brachypodium distachyon
Bradi4g29887 0.5kb downstream 0.5kb downstream 500 false Bd4: 35466585-35467084 Brachypodium distachyon
Bradi4g29887 1.0kb upstream 1.0kb upstream 12965 true Bd4: 35453620-35466584 Brachypodium distachyon
Bradi4g29887 1.0kb upstream 1.0kb upstream 1000 false Bd4: 35453620-35454619 Brachypodium distachyon
Bradi4g29887 1.0kb downstream 1.0kb downstream 12965 true Bd4: 35454620-35467584 Brachypodium distachyon
Bradi4g29887 1.0kb downstream 1.0kb downstream 1000 false Bd4: 35466585-35467584 Brachypodium distachyon
Bradi4g29887 2.0kb upstream 2.0kb upstream 13965 true Bd4: 35452620-35466584 Brachypodium distachyon
Bradi4g29887 2.0kb upstream 2.0kb upstream 2000 false Bd4: 35452620-35454619 Brachypodium distachyon
Bradi4g29887 2.0kb downstream 2.0kb downstream 13965 true Bd4: 35454620-35468584 Brachypodium distachyon
Bradi4g29887 2.0kb downstream 2.0kb downstream 2000 false Bd4: 35466585-35468584 Brachypodium distachyon
Bradi4g29887 5.0kb upstream 5.0kb upstream 16965 true Bd4: 35449620-35466584 Brachypodium distachyon
Bradi4g29887 5.0kb upstream 5.0kb upstream 5000 false Bd4: 35449620-35454619 Brachypodium distachyon
Bradi4g29887 5.0kb downstream 5.0kb downstream 16965 true Bd4: 35454620-35471584 Brachypodium distachyon
Bradi4g29887 5.0kb downstream 5.0kb downstream 5000 false Bd4: 35466585-35471584 Brachypodium distachyon
Bradi4g29887 10.0kb upstream 10.0kb upstream 21965 true Bd4: 35444620-35466584 Brachypodium distachyon
Bradi4g29887 10.0kb upstream 10.0kb upstream 10000 false Bd4: 35444620-35454619 Brachypodium distachyon
Bradi4g29887 10.0kb downstream 10.0kb downstream 21965 true Bd4: 35454620-35476584 Brachypodium distachyon
Bradi4g29887 10.0kb downstream 10.0kb downstream 10000 false Bd4: 35466585-35476584 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570795 5269 Grass View MSA
122041770 5273 Angiosperm View MSA
121347464 5274 Embryophyte View MSA
123426480 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.202        
cufflinks 0.738        
cufflinks 0.563        
cufflinks 0.636        
cufflinks 0.034     Low Low
cufflinks 0.541        
cufflinks 0.538        
cufflinks 0.43        
cufflinks 0.585        
cufflinks 0.221        
cufflinks 0.138        
cufflinks 0.444        
cufflinks 0.06        
cufflinks 0.088        
cufflinks 0.057     Low Low
cufflinks 0.472        
cufflinks 0.25        
cufflinks 0.804       High
cufflinks 0.167     Low  
cufflinks 0.003     Low Low
cufflinks 0.197        
cufflinks 0.509        
cufflinks 0.37        
cufflinks 0.362        
cufflinks 0.496        
cufflinks 0.405        
cufflinks 0.09     Low  
cufflinks 0.297        
cufflinks 0.404        
cufflinks 0.477        

0 Strain