Gene : Bradi3g58720 B. distachyon v3.1
Defline:  (1 of 1) PTHR10742:SF246 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1 Genomic Order:  7277
Name:  ? Bradi3g58720 Secondary Identifier:  ? PAC:32817206
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6441 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g58720 0.5kb upstream 0.5kb upstream 4375 true Bd3: 57884695-57889069 Brachypodium distachyon
Bradi3g58720 0.5kb upstream 0.5kb upstream 500 false Bd3: 57884695-57885194 Brachypodium distachyon
Bradi3g58720 0.5kb downstream 0.5kb downstream 4375 true Bd3: 57885195-57889569 Brachypodium distachyon
Bradi3g58720 0.5kb downstream 0.5kb downstream 500 false Bd3: 57889070-57889569 Brachypodium distachyon
Bradi3g58720 1.0kb upstream 1.0kb upstream 4875 true Bd3: 57884195-57889069 Brachypodium distachyon
Bradi3g58720 1.0kb upstream 1.0kb upstream 1000 false Bd3: 57884195-57885194 Brachypodium distachyon
Bradi3g58720 1.0kb downstream 1.0kb downstream 4875 true Bd3: 57885195-57890069 Brachypodium distachyon
Bradi3g58720 1.0kb downstream 1.0kb downstream 1000 false Bd3: 57889070-57890069 Brachypodium distachyon
Bradi3g58720 2.0kb upstream 2.0kb upstream 5875 true Bd3: 57883195-57889069 Brachypodium distachyon
Bradi3g58720 2.0kb upstream 2.0kb upstream 2000 false Bd3: 57883195-57885194 Brachypodium distachyon
Bradi3g58720 2.0kb downstream 2.0kb downstream 5875 true Bd3: 57885195-57891069 Brachypodium distachyon
Bradi3g58720 2.0kb downstream 2.0kb downstream 2000 false Bd3: 57889070-57891069 Brachypodium distachyon
Bradi3g58720 5.0kb upstream 5.0kb upstream 8875 true Bd3: 57880195-57889069 Brachypodium distachyon
Bradi3g58720 5.0kb upstream 5.0kb upstream 5000 false Bd3: 57880195-57885194 Brachypodium distachyon
Bradi3g58720 5.0kb downstream 5.0kb downstream 8875 true Bd3: 57885195-57894069 Brachypodium distachyon
Bradi3g58720 5.0kb downstream 5.0kb downstream 5000 false Bd3: 57889070-57894069 Brachypodium distachyon
Bradi3g58720 10.0kb upstream 10.0kb upstream 13875 true Bd3: 57875195-57889069 Brachypodium distachyon
Bradi3g58720 10.0kb upstream 10.0kb upstream 10000 false Bd3: 57875195-57885194 Brachypodium distachyon
Bradi3g58720 10.0kb downstream 10.0kb downstream 13875 true Bd3: 57885195-57899069 Brachypodium distachyon
Bradi3g58720 10.0kb downstream 10.0kb downstream 10000 false Bd3: 57889070-57899069 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577378 5269 Grass View MSA
122043910 5273 Angiosperm View MSA
121310209 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.69        
cufflinks 1.545        
cufflinks 1.431        
cufflinks 1.331        
cufflinks 0.256       Low
cufflinks 1.427        
cufflinks 1.578        
cufflinks 1.121        
cufflinks 1.118        
cufflinks 0.794        
cufflinks 0.605        
cufflinks 1.228        
cufflinks 0.559        
cufflinks 0.419       Low
cufflinks 0.721        
cufflinks 1.672        
cufflinks 0.982        
cufflinks 2.342       High
cufflinks 0.739        
cufflinks 0.312       Low
cufflinks 1.739       High
cufflinks 1.202        
cufflinks 1.038        
cufflinks 1.197        
cufflinks 1.128        
cufflinks 1.241        
cufflinks 0.766        
cufflinks 0.986        
cufflinks 1.021        
cufflinks 1.927       High

0 Strain