Gene : Bradi4g02040 B. distachyon v3.1
Defline:  (1 of 8) PF06943 - LSD1 zinc finger (zf-LSD1) Genomic Order:  227
Name:  ? Bradi4g02040 Secondary Identifier:  ? PAC:32790978
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g02040 0.5kb upstream 0.5kb upstream 4672 true Bd4: 1334996-1339667 Brachypodium distachyon
Bradi4g02040 0.5kb upstream 0.5kb upstream 500 false Bd4: 1334996-1335495 Brachypodium distachyon
Bradi4g02040 0.5kb downstream 0.5kb downstream 4672 true Bd4: 1335496-1340167 Brachypodium distachyon
Bradi4g02040 0.5kb downstream 0.5kb downstream 500 false Bd4: 1339668-1340167 Brachypodium distachyon
Bradi4g02040 1.0kb upstream 1.0kb upstream 5172 true Bd4: 1334496-1339667 Brachypodium distachyon
Bradi4g02040 1.0kb upstream 1.0kb upstream 1000 false Bd4: 1334496-1335495 Brachypodium distachyon
Bradi4g02040 1.0kb downstream 1.0kb downstream 5172 true Bd4: 1335496-1340667 Brachypodium distachyon
Bradi4g02040 1.0kb downstream 1.0kb downstream 1000 false Bd4: 1339668-1340667 Brachypodium distachyon
Bradi4g02040 2.0kb upstream 2.0kb upstream 6172 true Bd4: 1333496-1339667 Brachypodium distachyon
Bradi4g02040 2.0kb upstream 2.0kb upstream 2000 false Bd4: 1333496-1335495 Brachypodium distachyon
Bradi4g02040 2.0kb downstream 2.0kb downstream 6172 true Bd4: 1335496-1341667 Brachypodium distachyon
Bradi4g02040 2.0kb downstream 2.0kb downstream 2000 false Bd4: 1339668-1341667 Brachypodium distachyon
Bradi4g02040 5.0kb upstream 5.0kb upstream 9172 true Bd4: 1330496-1339667 Brachypodium distachyon
Bradi4g02040 5.0kb upstream 5.0kb upstream 5000 false Bd4: 1330496-1335495 Brachypodium distachyon
Bradi4g02040 5.0kb downstream 5.0kb downstream 9172 true Bd4: 1335496-1344667 Brachypodium distachyon
Bradi4g02040 5.0kb downstream 5.0kb downstream 5000 false Bd4: 1339668-1344667 Brachypodium distachyon
Bradi4g02040 10.0kb upstream 10.0kb upstream 14172 true Bd4: 1325496-1339667 Brachypodium distachyon
Bradi4g02040 10.0kb upstream 10.0kb upstream 10000 false Bd4: 1325496-1335495 Brachypodium distachyon
Bradi4g02040 10.0kb downstream 10.0kb downstream 14172 true Bd4: 1335496-1349667 Brachypodium distachyon
Bradi4g02040 10.0kb downstream 10.0kb downstream 10000 false Bd4: 1339668-1349667 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124585557 5269 Grass View MSA
122043941 5273 Angiosperm View MSA
121347680 5274 Embryophyte View MSA
123425652 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.838     High High
cufflinks 6.506        
cufflinks 8.668        
cufflinks 6.015        
cufflinks 6.258        
cufflinks 6.14        
cufflinks 6.102        
cufflinks 7.041        
cufflinks 5.505       Low
cufflinks 7.59        
cufflinks 7.143        
cufflinks 7.058        
cufflinks 7.415     High  
cufflinks 6.26        
cufflinks 9.584     High High
cufflinks 6.821        
cufflinks 7.693        
cufflinks 9.268       High
cufflinks 10.991       High
cufflinks 3.019       Low
cufflinks 7.268        
cufflinks 9.185       High
cufflinks 6.618        
cufflinks 5.987        
cufflinks 5.512       Low
cufflinks 8.619        
cufflinks 7.722        
cufflinks 8.864        
cufflinks 8.857        
cufflinks 7.173        

0 Strain