Gene : Bradi4g00910 B. distachyon v3.1
Defline:  (1 of 1) PTHR11540:SF27 - MALATE DEHYDROGENASE, GLYOXYSOMAL-RELATED Genomic Order:  92
Name:  ? Bradi4g00910 Secondary Identifier:  ? PAC:32790318
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon GLUCONEO-PWY Brachypodium distachyon pathologic  
Bdistachyon GLYOXYLATE-BYPASS Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon PWY-561 Brachypodium distachyon pathologic  
Bdistachyon PWY-5690 Brachypodium distachyon pathologic  
Bdistachyon PWY-5913 Brachypodium distachyon pathologic  
Bdistachyon PWY-7115 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g00910 0.5kb upstream 0.5kb upstream 5142 true Bd4: 474639-479780 Brachypodium distachyon
Bradi4g00910 0.5kb upstream 0.5kb upstream 500 false Bd4: 474639-475138 Brachypodium distachyon
Bradi4g00910 0.5kb downstream 0.5kb downstream 5142 true Bd4: 475139-480280 Brachypodium distachyon
Bradi4g00910 0.5kb downstream 0.5kb downstream 500 false Bd4: 479781-480280 Brachypodium distachyon
Bradi4g00910 1.0kb upstream 1.0kb upstream 5642 true Bd4: 474139-479780 Brachypodium distachyon
Bradi4g00910 1.0kb upstream 1.0kb upstream 1000 false Bd4: 474139-475138 Brachypodium distachyon
Bradi4g00910 1.0kb downstream 1.0kb downstream 5642 true Bd4: 475139-480780 Brachypodium distachyon
Bradi4g00910 1.0kb downstream 1.0kb downstream 1000 false Bd4: 479781-480780 Brachypodium distachyon
Bradi4g00910 2.0kb upstream 2.0kb upstream 6642 true Bd4: 473139-479780 Brachypodium distachyon
Bradi4g00910 2.0kb upstream 2.0kb upstream 2000 false Bd4: 473139-475138 Brachypodium distachyon
Bradi4g00910 2.0kb downstream 2.0kb downstream 6642 true Bd4: 475139-481780 Brachypodium distachyon
Bradi4g00910 2.0kb downstream 2.0kb downstream 2000 false Bd4: 479781-481780 Brachypodium distachyon
Bradi4g00910 5.0kb upstream 5.0kb upstream 9642 true Bd4: 470139-479780 Brachypodium distachyon
Bradi4g00910 5.0kb upstream 5.0kb upstream 5000 false Bd4: 470139-475138 Brachypodium distachyon
Bradi4g00910 5.0kb downstream 5.0kb downstream 9642 true Bd4: 475139-484780 Brachypodium distachyon
Bradi4g00910 5.0kb downstream 5.0kb downstream 5000 false Bd4: 479781-484780 Brachypodium distachyon
Bradi4g00910 10.0kb upstream 10.0kb upstream 14642 true Bd4: 465139-479780 Brachypodium distachyon
Bradi4g00910 10.0kb upstream 10.0kb upstream 10000 false Bd4: 465139-475138 Brachypodium distachyon
Bradi4g00910 10.0kb downstream 10.0kb downstream 14642 true Bd4: 475139-489780 Brachypodium distachyon
Bradi4g00910 10.0kb downstream 10.0kb downstream 10000 false Bd4: 479781-489780 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579524 5269 Grass View MSA
122041534 5273 Angiosperm View MSA
121344614 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.528       Low
cufflinks 9.721        
cufflinks 13.498     High  
cufflinks 9.979        
cufflinks 9.161     High  
cufflinks 11.672     High  
cufflinks 10.561     High  
cufflinks 10.204     High  
cufflinks 10.592     High  
cufflinks 18.301     High High
cufflinks 13.103     High  
cufflinks 11.45     High  
cufflinks 13.871     High  
cufflinks 13.239     High  
cufflinks 8.357       Low
cufflinks 10.485     High  
cufflinks 12.763     High  
cufflinks 12.101     High  
cufflinks 24.182     High High
cufflinks 35.835     High High
cufflinks 11.408     High  
cufflinks 14.188     High  
cufflinks 9.084        
cufflinks 9.709     High  
cufflinks 10.865     High  
cufflinks 16.551     High  
cufflinks 13.451     High  
cufflinks 18.152     High High
cufflinks 16.713     High  
cufflinks 9.768        

0 Strain