Gene : Bradi4g07854 B. distachyon v3.1
Defline:  (1 of 1) PTHR11451:SF21 - BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE Genomic Order:  1027
Name:  ? Bradi4g07854 Secondary Identifier:  ? PAC:32785563
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g07854 0.5kb upstream 0.5kb upstream 9290 true Bd4: 6774145-6783434 Brachypodium distachyon
Bradi4g07854 0.5kb upstream 0.5kb upstream 500 false Bd4: 6782935-6783434 Brachypodium distachyon
Bradi4g07854 0.5kb downstream 0.5kb downstream 9290 true Bd4: 6773645-6782934 Brachypodium distachyon
Bradi4g07854 0.5kb downstream 0.5kb downstream 500 false Bd4: 6773645-6774144 Brachypodium distachyon
Bradi4g07854 1.0kb upstream 1.0kb upstream 9790 true Bd4: 6774145-6783934 Brachypodium distachyon
Bradi4g07854 1.0kb upstream 1.0kb upstream 1000 false Bd4: 6782935-6783934 Brachypodium distachyon
Bradi4g07854 1.0kb downstream 1.0kb downstream 9790 true Bd4: 6773145-6782934 Brachypodium distachyon
Bradi4g07854 1.0kb downstream 1.0kb downstream 1000 false Bd4: 6773145-6774144 Brachypodium distachyon
Bradi4g07854 2.0kb upstream 2.0kb upstream 10790 true Bd4: 6774145-6784934 Brachypodium distachyon
Bradi4g07854 2.0kb upstream 2.0kb upstream 2000 false Bd4: 6782935-6784934 Brachypodium distachyon
Bradi4g07854 2.0kb downstream 2.0kb downstream 10790 true Bd4: 6772145-6782934 Brachypodium distachyon
Bradi4g07854 2.0kb downstream 2.0kb downstream 2000 false Bd4: 6772145-6774144 Brachypodium distachyon
Bradi4g07854 5.0kb upstream 5.0kb upstream 13790 true Bd4: 6774145-6787934 Brachypodium distachyon
Bradi4g07854 5.0kb upstream 5.0kb upstream 5000 false Bd4: 6782935-6787934 Brachypodium distachyon
Bradi4g07854 5.0kb downstream 5.0kb downstream 13790 true Bd4: 6769145-6782934 Brachypodium distachyon
Bradi4g07854 5.0kb downstream 5.0kb downstream 5000 false Bd4: 6769145-6774144 Brachypodium distachyon
Bradi4g07854 10.0kb upstream 10.0kb upstream 18790 true Bd4: 6774145-6792934 Brachypodium distachyon
Bradi4g07854 10.0kb upstream 10.0kb upstream 10000 false Bd4: 6782935-6792934 Brachypodium distachyon
Bradi4g07854 10.0kb downstream 10.0kb downstream 18790 true Bd4: 6764145-6782934 Brachypodium distachyon
Bradi4g07854 10.0kb downstream 10.0kb downstream 10000 false Bd4: 6764145-6774144 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578171 5269 Grass View MSA
122046547 5273 Angiosperm View MSA
121346675 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.271     High  
cufflinks 25.181     High  
cufflinks 30.791     High High
cufflinks 25.884     High  
cufflinks 16.064     High  
cufflinks 22.942     High  
cufflinks 21.601     High  
cufflinks 16.699     High  
cufflinks 19.64     High  
cufflinks 22.861     High  
cufflinks 16.176     High  
cufflinks 21.731     High  
cufflinks 11.404     High Low
cufflinks 13.626     High Low
cufflinks 16.06     High  
cufflinks 23.147     High  
cufflinks 23.51     High  
cufflinks 34.405     High High
cufflinks 25.167     High  
cufflinks 6.207       Low
cufflinks 19.881     High  
cufflinks 24.933     High  
cufflinks 15.681     High  
cufflinks 18.531     High  
cufflinks 22.595     High  
cufflinks 30.965     High High
cufflinks 16.264     High  
cufflinks 27.352     High  
cufflinks 25.046     High  
cufflinks 26.451     High  

0 Strain