Gene : Pp3c12_23090 P. patens v3.3
Defline:  (1 of 1) PTHR22807:SF34 - METHYLTRANSFERASE NSUN6-RELATED Genomic Order:  1019
Name:  ? Pp3c12_23090 Secondary Identifier:  ? PAC:32972888
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c12_23090 0.5kb upstream 0.5kb upstream 7488 true Chr12: 15228286-15235773 Physcomitrium patens
Pp3c12_23090 0.5kb upstream 0.5kb upstream 500 false Chr12: 15228286-15228785 Physcomitrium patens
Pp3c12_23090 0.5kb downstream 0.5kb downstream 7488 true Chr12: 15228786-15236273 Physcomitrium patens
Pp3c12_23090 0.5kb downstream 0.5kb downstream 500 false Chr12: 15235774-15236273 Physcomitrium patens
Pp3c12_23090 1.0kb upstream 1.0kb upstream 7988 true Chr12: 15227786-15235773 Physcomitrium patens
Pp3c12_23090 1.0kb upstream 1.0kb upstream 1000 false Chr12: 15227786-15228785 Physcomitrium patens
Pp3c12_23090 1.0kb downstream 1.0kb downstream 7988 true Chr12: 15228786-15236773 Physcomitrium patens
Pp3c12_23090 1.0kb downstream 1.0kb downstream 1000 false Chr12: 15235774-15236773 Physcomitrium patens
Pp3c12_23090 2.0kb upstream 2.0kb upstream 8988 true Chr12: 15226786-15235773 Physcomitrium patens
Pp3c12_23090 2.0kb upstream 2.0kb upstream 2000 false Chr12: 15226786-15228785 Physcomitrium patens
Pp3c12_23090 2.0kb downstream 2.0kb downstream 8988 true Chr12: 15228786-15237773 Physcomitrium patens
Pp3c12_23090 2.0kb downstream 2.0kb downstream 2000 false Chr12: 15235774-15237773 Physcomitrium patens
Pp3c12_23090 5.0kb upstream 5.0kb upstream 11988 true Chr12: 15223786-15235773 Physcomitrium patens
Pp3c12_23090 5.0kb upstream 5.0kb upstream 5000 false Chr12: 15223786-15228785 Physcomitrium patens
Pp3c12_23090 5.0kb downstream 5.0kb downstream 11988 true Chr12: 15228786-15240773 Physcomitrium patens
Pp3c12_23090 5.0kb downstream 5.0kb downstream 5000 false Chr12: 15235774-15240773 Physcomitrium patens
Pp3c12_23090 10.0kb upstream 10.0kb upstream 16988 true Chr12: 15218786-15235773 Physcomitrium patens
Pp3c12_23090 10.0kb upstream 10.0kb upstream 10000 false Chr12: 15218786-15228785 Physcomitrium patens
Pp3c12_23090 10.0kb downstream 10.0kb downstream 16988 true Chr12: 15228786-15245773 Physcomitrium patens
Pp3c12_23090 10.0kb downstream 10.0kb downstream 10000 false Chr12: 15235774-15245773 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346670 5274 Embryophyte View MSA
123427467 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.414        
cufflinks 0.818        
cufflinks 1.636        
cufflinks 1.243        
cufflinks 1.729        
cufflinks 2.179       High
cufflinks 0.199       Low
cufflinks 1.5        
cufflinks 0.17       Low
cufflinks 1.589        
cufflinks 2.249       High
cufflinks 1.727        
cufflinks 2.029        
cufflinks 0.93        
cufflinks 1.303        
cufflinks 1.326        
cufflinks 0.643        
cufflinks 0.512       Low
cufflinks 1.617        
cufflinks 1.405        
cufflinks 1.716        
cufflinks 0.722        
cufflinks 1.517        
cufflinks 2.175       High
cufflinks 1.69        
cufflinks 1.034        
cufflinks 1.114        
cufflinks 0.604       Low
cufflinks 0.844        
cufflinks 1.181        

0 Strain