Gene : Pp3c12_16113 P. patens v3.3
Defline:  (1 of 2) PTHR23244:SF262 - KELCH DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  723
Name:  ? Pp3c12_16113 Secondary Identifier:  ? PAC:32972392
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c12_16113 0.5kb upstream 0.5kb upstream 6101 true Chr12: 10668423-10674523 Physcomitrium patens
Pp3c12_16113 0.5kb upstream 0.5kb upstream 500 false Chr12: 10674024-10674523 Physcomitrium patens
Pp3c12_16113 0.5kb downstream 0.5kb downstream 6101 true Chr12: 10667923-10674023 Physcomitrium patens
Pp3c12_16113 0.5kb downstream 0.5kb downstream 500 false Chr12: 10667923-10668422 Physcomitrium patens
Pp3c12_16113 1.0kb upstream 1.0kb upstream 6601 true Chr12: 10668423-10675023 Physcomitrium patens
Pp3c12_16113 1.0kb upstream 1.0kb upstream 1000 false Chr12: 10674024-10675023 Physcomitrium patens
Pp3c12_16113 1.0kb downstream 1.0kb downstream 6601 true Chr12: 10667423-10674023 Physcomitrium patens
Pp3c12_16113 1.0kb downstream 1.0kb downstream 1000 false Chr12: 10667423-10668422 Physcomitrium patens
Pp3c12_16113 2.0kb upstream 2.0kb upstream 7601 true Chr12: 10668423-10676023 Physcomitrium patens
Pp3c12_16113 2.0kb upstream 2.0kb upstream 2000 false Chr12: 10674024-10676023 Physcomitrium patens
Pp3c12_16113 2.0kb downstream 2.0kb downstream 7601 true Chr12: 10666423-10674023 Physcomitrium patens
Pp3c12_16113 2.0kb downstream 2.0kb downstream 2000 false Chr12: 10666423-10668422 Physcomitrium patens
Pp3c12_16113 5.0kb upstream 5.0kb upstream 10601 true Chr12: 10668423-10679023 Physcomitrium patens
Pp3c12_16113 5.0kb upstream 5.0kb upstream 5000 false Chr12: 10674024-10679023 Physcomitrium patens
Pp3c12_16113 5.0kb downstream 5.0kb downstream 10601 true Chr12: 10663423-10674023 Physcomitrium patens
Pp3c12_16113 5.0kb downstream 5.0kb downstream 5000 false Chr12: 10663423-10668422 Physcomitrium patens
Pp3c12_16113 10.0kb upstream 10.0kb upstream 15601 true Chr12: 10668423-10684023 Physcomitrium patens
Pp3c12_16113 10.0kb upstream 10.0kb upstream 10000 false Chr12: 10674024-10684023 Physcomitrium patens
Pp3c12_16113 10.0kb downstream 10.0kb downstream 15601 true Chr12: 10658423-10674023 Physcomitrium patens
Pp3c12_16113 10.0kb downstream 10.0kb downstream 10000 false Chr12: 10658423-10668422 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344753 5274 Embryophyte View MSA
123428379 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.1        
cufflinks 0.143       High
cufflinks 0.16       High
cufflinks 0.116        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.061     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.061     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.053     Low Low
cufflinks 0.069     Low  
cufflinks 0.082     Low  
cufflinks 0.101     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.124       High
cufflinks 0.05     Low Low
cufflinks 0.057     Low  
cufflinks 0.069     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain