Gene : Pp3c14_20150 P. patens v3.3
Defline:  (1 of 2) PF14604//PF16746 - Variant SH3 domain (SH3_9) // BAR domain of APPL family (BAR_3) Genomic Order:  989
Name:  ? Pp3c14_20150 Secondary Identifier:  ? PAC:32960379
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_20150 0.5kb upstream 0.5kb upstream 6982 true Chr14: 13175918-13182899 Physcomitrium patens
Pp3c14_20150 0.5kb upstream 0.5kb upstream 500 false Chr14: 13175918-13176417 Physcomitrium patens
Pp3c14_20150 0.5kb downstream 0.5kb downstream 6982 true Chr14: 13176418-13183399 Physcomitrium patens
Pp3c14_20150 0.5kb downstream 0.5kb downstream 500 false Chr14: 13182900-13183399 Physcomitrium patens
Pp3c14_20150 1.0kb upstream 1.0kb upstream 7482 true Chr14: 13175418-13182899 Physcomitrium patens
Pp3c14_20150 1.0kb upstream 1.0kb upstream 1000 false Chr14: 13175418-13176417 Physcomitrium patens
Pp3c14_20150 1.0kb downstream 1.0kb downstream 7482 true Chr14: 13176418-13183899 Physcomitrium patens
Pp3c14_20150 1.0kb downstream 1.0kb downstream 1000 false Chr14: 13182900-13183899 Physcomitrium patens
Pp3c14_20150 2.0kb upstream 2.0kb upstream 8482 true Chr14: 13174418-13182899 Physcomitrium patens
Pp3c14_20150 2.0kb upstream 2.0kb upstream 2000 false Chr14: 13174418-13176417 Physcomitrium patens
Pp3c14_20150 2.0kb downstream 2.0kb downstream 8482 true Chr14: 13176418-13184899 Physcomitrium patens
Pp3c14_20150 2.0kb downstream 2.0kb downstream 2000 false Chr14: 13182900-13184899 Physcomitrium patens
Pp3c14_20150 5.0kb upstream 5.0kb upstream 11482 true Chr14: 13171418-13182899 Physcomitrium patens
Pp3c14_20150 5.0kb upstream 5.0kb upstream 5000 false Chr14: 13171418-13176417 Physcomitrium patens
Pp3c14_20150 5.0kb downstream 5.0kb downstream 11482 true Chr14: 13176418-13187899 Physcomitrium patens
Pp3c14_20150 5.0kb downstream 5.0kb downstream 5000 false Chr14: 13182900-13187899 Physcomitrium patens
Pp3c14_20150 10.0kb upstream 10.0kb upstream 16482 true Chr14: 13166418-13182899 Physcomitrium patens
Pp3c14_20150 10.0kb upstream 10.0kb upstream 10000 false Chr14: 13166418-13176417 Physcomitrium patens
Pp3c14_20150 10.0kb downstream 10.0kb downstream 16482 true Chr14: 13176418-13192899 Physcomitrium patens
Pp3c14_20150 10.0kb downstream 10.0kb downstream 10000 false Chr14: 13182900-13192899 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348506 5274 Embryophyte View MSA
123380886 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.803        
cufflinks 2.61       High
cufflinks 1.165        
cufflinks 0.794        
cufflinks 1.325        
cufflinks 1.517        
cufflinks 0.268       Low
cufflinks 0.873        
cufflinks 0.235       Low
cufflinks 0.99        
cufflinks 2.129       High
cufflinks 0.222       Low
cufflinks 0.99        
cufflinks 0.754        
cufflinks 0.891        
cufflinks 0.445       Low
cufflinks 0.664        
cufflinks 1.461        
cufflinks 0.768        
cufflinks 1.906       High
cufflinks 0.721        
cufflinks 1.718       High
cufflinks 1.412        
cufflinks 0.653        
cufflinks 1.017        
cufflinks 1.1        
cufflinks 0.932        
cufflinks 0.358       Low
cufflinks 0.642        
cufflinks 1.039        

0 Strain