Gene : Pp3c14_5560 P. patens v3.3
Defline:  (1 of 6) PF11937 - Protein of unknown function (DUF3455) (DUF3455) Genomic Order:  261
Name:  ? Pp3c14_5560 Secondary Identifier:  ? PAC:32960452
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_5560 0.5kb upstream 0.5kb upstream 4724 true Chr14: 3854289-3859012 Physcomitrium patens
Pp3c14_5560 0.5kb upstream 0.5kb upstream 500 false Chr14: 3858513-3859012 Physcomitrium patens
Pp3c14_5560 0.5kb downstream 0.5kb downstream 4724 true Chr14: 3853789-3858512 Physcomitrium patens
Pp3c14_5560 0.5kb downstream 0.5kb downstream 500 false Chr14: 3853789-3854288 Physcomitrium patens
Pp3c14_5560 1.0kb upstream 1.0kb upstream 5224 true Chr14: 3854289-3859512 Physcomitrium patens
Pp3c14_5560 1.0kb upstream 1.0kb upstream 1000 false Chr14: 3858513-3859512 Physcomitrium patens
Pp3c14_5560 1.0kb downstream 1.0kb downstream 5224 true Chr14: 3853289-3858512 Physcomitrium patens
Pp3c14_5560 1.0kb downstream 1.0kb downstream 1000 false Chr14: 3853289-3854288 Physcomitrium patens
Pp3c14_5560 2.0kb upstream 2.0kb upstream 6224 true Chr14: 3854289-3860512 Physcomitrium patens
Pp3c14_5560 2.0kb upstream 2.0kb upstream 2000 false Chr14: 3858513-3860512 Physcomitrium patens
Pp3c14_5560 2.0kb downstream 2.0kb downstream 6224 true Chr14: 3852289-3858512 Physcomitrium patens
Pp3c14_5560 2.0kb downstream 2.0kb downstream 2000 false Chr14: 3852289-3854288 Physcomitrium patens
Pp3c14_5560 5.0kb upstream 5.0kb upstream 9224 true Chr14: 3854289-3863512 Physcomitrium patens
Pp3c14_5560 5.0kb upstream 5.0kb upstream 5000 false Chr14: 3858513-3863512 Physcomitrium patens
Pp3c14_5560 5.0kb downstream 5.0kb downstream 9224 true Chr14: 3849289-3858512 Physcomitrium patens
Pp3c14_5560 5.0kb downstream 5.0kb downstream 5000 false Chr14: 3849289-3854288 Physcomitrium patens
Pp3c14_5560 10.0kb upstream 10.0kb upstream 14224 true Chr14: 3854289-3868512 Physcomitrium patens
Pp3c14_5560 10.0kb upstream 10.0kb upstream 10000 false Chr14: 3858513-3868512 Physcomitrium patens
Pp3c14_5560 10.0kb downstream 10.0kb downstream 14224 true Chr14: 3844289-3858512 Physcomitrium patens
Pp3c14_5560 10.0kb downstream 10.0kb downstream 10000 false Chr14: 3844289-3854288 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342982 5274 Embryophyte View MSA
123379356 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 365.215     High  
cufflinks 279.563     High  
cufflinks 581.398     High High
cufflinks 550.373     High High
cufflinks 114.384     High  
cufflinks 257.588     High  
cufflinks 136.804     High  
cufflinks 478.182     High  
cufflinks 562.21     High High
cufflinks 593.541     High High
cufflinks 222.191     High  
cufflinks 127.043     High  
cufflinks 139.035     High  
cufflinks 174.433     High  
cufflinks 518.163     High  
cufflinks 288.921     High  
cufflinks 395.908     High  
cufflinks 116.585     High  
cufflinks 144.884     High  
cufflinks 62.243     High Low
cufflinks 247.282     High  
cufflinks 181.367     High  
cufflinks 275.649     High  
cufflinks 190.787     High  
cufflinks 13.818       Low
cufflinks 805.733     High High
cufflinks 114.314     High  
cufflinks 307.631     High  
cufflinks 351.435     High  
cufflinks 525.973     High  

0 Strain