Gene : Pp3c14_6410 P. patens v3.3
Defline:  (1 of 5) PTHR33566:SF1 - GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 Genomic Order:  307
Name:  ? Pp3c14_6410 Secondary Identifier:  ? PAC:32962077
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_6410 0.5kb upstream 0.5kb upstream 2333 true Chr14: 4378520-4380852 Physcomitrium patens
Pp3c14_6410 0.5kb upstream 0.5kb upstream 500 false Chr14: 4380353-4380852 Physcomitrium patens
Pp3c14_6410 0.5kb downstream 0.5kb downstream 2333 true Chr14: 4378020-4380352 Physcomitrium patens
Pp3c14_6410 0.5kb downstream 0.5kb downstream 500 false Chr14: 4378020-4378519 Physcomitrium patens
Pp3c14_6410 1.0kb upstream 1.0kb upstream 2833 true Chr14: 4378520-4381352 Physcomitrium patens
Pp3c14_6410 1.0kb upstream 1.0kb upstream 1000 false Chr14: 4380353-4381352 Physcomitrium patens
Pp3c14_6410 1.0kb downstream 1.0kb downstream 2833 true Chr14: 4377520-4380352 Physcomitrium patens
Pp3c14_6410 1.0kb downstream 1.0kb downstream 1000 false Chr14: 4377520-4378519 Physcomitrium patens
Pp3c14_6410 2.0kb upstream 2.0kb upstream 3833 true Chr14: 4378520-4382352 Physcomitrium patens
Pp3c14_6410 2.0kb upstream 2.0kb upstream 2000 false Chr14: 4380353-4382352 Physcomitrium patens
Pp3c14_6410 2.0kb downstream 2.0kb downstream 3833 true Chr14: 4376520-4380352 Physcomitrium patens
Pp3c14_6410 2.0kb downstream 2.0kb downstream 2000 false Chr14: 4376520-4378519 Physcomitrium patens
Pp3c14_6410 5.0kb upstream 5.0kb upstream 6833 true Chr14: 4378520-4385352 Physcomitrium patens
Pp3c14_6410 5.0kb upstream 5.0kb upstream 5000 false Chr14: 4380353-4385352 Physcomitrium patens
Pp3c14_6410 5.0kb downstream 5.0kb downstream 6833 true Chr14: 4373520-4380352 Physcomitrium patens
Pp3c14_6410 5.0kb downstream 5.0kb downstream 5000 false Chr14: 4373520-4378519 Physcomitrium patens
Pp3c14_6410 10.0kb upstream 10.0kb upstream 11833 true Chr14: 4378520-4390352 Physcomitrium patens
Pp3c14_6410 10.0kb upstream 10.0kb upstream 10000 false Chr14: 4380353-4390352 Physcomitrium patens
Pp3c14_6410 10.0kb downstream 10.0kb downstream 11833 true Chr14: 4368520-4380352 Physcomitrium patens
Pp3c14_6410 10.0kb downstream 10.0kb downstream 10000 false Chr14: 4368520-4378519 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121333116 5274 Embryophyte Singleton cluster - no MSA
123370014 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.413       High
cufflinks 0.013     Low  
cufflinks 0.012     Low  
cufflinks 0.037     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low Low
cufflinks 0.033     Low  
cufflinks 0.064     Low  
cufflinks 0.009     Low  
cufflinks 0.007     Low Low
cufflinks 0.087        
cufflinks 0.058     Low  
cufflinks 0.067     Low  
cufflinks 0.129       High
cufflinks 0.037     Low  
cufflinks 0.034     Low  
cufflinks 0.063     Low  
cufflinks 0.441       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.004     Low Low
cufflinks 0.005     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.011     Low  

0 Strain