Gene : Pp3c14_26180 P. patens v3.3
Defline:  (1 of 3) PF05553 - Cotton fibre expressed protein (DUF761) Genomic Order:  1297
Name:  ? Pp3c14_26180 Secondary Identifier:  ? PAC:32959784
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c14_26180 0.5kb upstream 0.5kb upstream 4100 true Chr14: 16787775-16791874 Physcomitrium patens
Pp3c14_26180 0.5kb upstream 0.5kb upstream 500 false Chr14: 16791375-16791874 Physcomitrium patens
Pp3c14_26180 0.5kb downstream 0.5kb downstream 4100 true Chr14: 16787275-16791374 Physcomitrium patens
Pp3c14_26180 0.5kb downstream 0.5kb downstream 500 false Chr14: 16787275-16787774 Physcomitrium patens
Pp3c14_26180 1.0kb upstream 1.0kb upstream 4600 true Chr14: 16787775-16792374 Physcomitrium patens
Pp3c14_26180 1.0kb upstream 1.0kb upstream 1000 false Chr14: 16791375-16792374 Physcomitrium patens
Pp3c14_26180 1.0kb downstream 1.0kb downstream 4600 true Chr14: 16786775-16791374 Physcomitrium patens
Pp3c14_26180 1.0kb downstream 1.0kb downstream 1000 false Chr14: 16786775-16787774 Physcomitrium patens
Pp3c14_26180 2.0kb upstream 2.0kb upstream 5600 true Chr14: 16787775-16793374 Physcomitrium patens
Pp3c14_26180 2.0kb upstream 2.0kb upstream 2000 false Chr14: 16791375-16793374 Physcomitrium patens
Pp3c14_26180 2.0kb downstream 2.0kb downstream 5600 true Chr14: 16785775-16791374 Physcomitrium patens
Pp3c14_26180 2.0kb downstream 2.0kb downstream 2000 false Chr14: 16785775-16787774 Physcomitrium patens
Pp3c14_26180 5.0kb upstream 5.0kb upstream 8600 true Chr14: 16787775-16796374 Physcomitrium patens
Pp3c14_26180 5.0kb upstream 5.0kb upstream 5000 false Chr14: 16791375-16796374 Physcomitrium patens
Pp3c14_26180 5.0kb downstream 5.0kb downstream 8600 true Chr14: 16782775-16791374 Physcomitrium patens
Pp3c14_26180 5.0kb downstream 5.0kb downstream 5000 false Chr14: 16782775-16787774 Physcomitrium patens
Pp3c14_26180 10.0kb upstream 10.0kb upstream 13600 true Chr14: 16787775-16801374 Physcomitrium patens
Pp3c14_26180 10.0kb upstream 10.0kb upstream 10000 false Chr14: 16791375-16801374 Physcomitrium patens
Pp3c14_26180 10.0kb downstream 10.0kb downstream 13600 true Chr14: 16777775-16791374 Physcomitrium patens
Pp3c14_26180 10.0kb downstream 10.0kb downstream 10000 false Chr14: 16777775-16787774 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343638 5274 Embryophyte View MSA
123379810 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low High
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.001     Low Low
cufflinks 0.005     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain