Gene : Pp3c15_18470 P. patens v3.3
Defline:  (1 of 1) PF00018 - SH3 domain (SH3_1) Genomic Order:  839
Name:  ? Pp3c15_18470 Secondary Identifier:  ? PAC:32927525
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c15_18470 0.5kb upstream 0.5kb upstream 12475 true Chr15: 12147398-12159872 Physcomitrium patens
Pp3c15_18470 0.5kb upstream 0.5kb upstream 500 false Chr15: 12159373-12159872 Physcomitrium patens
Pp3c15_18470 0.5kb downstream 0.5kb downstream 12475 true Chr15: 12146898-12159372 Physcomitrium patens
Pp3c15_18470 0.5kb downstream 0.5kb downstream 500 false Chr15: 12146898-12147397 Physcomitrium patens
Pp3c15_18470 1.0kb upstream 1.0kb upstream 12975 true Chr15: 12147398-12160372 Physcomitrium patens
Pp3c15_18470 1.0kb upstream 1.0kb upstream 1000 false Chr15: 12159373-12160372 Physcomitrium patens
Pp3c15_18470 1.0kb downstream 1.0kb downstream 12975 true Chr15: 12146398-12159372 Physcomitrium patens
Pp3c15_18470 1.0kb downstream 1.0kb downstream 1000 false Chr15: 12146398-12147397 Physcomitrium patens
Pp3c15_18470 2.0kb upstream 2.0kb upstream 13975 true Chr15: 12147398-12161372 Physcomitrium patens
Pp3c15_18470 2.0kb upstream 2.0kb upstream 2000 false Chr15: 12159373-12161372 Physcomitrium patens
Pp3c15_18470 2.0kb downstream 2.0kb downstream 13975 true Chr15: 12145398-12159372 Physcomitrium patens
Pp3c15_18470 2.0kb downstream 2.0kb downstream 2000 false Chr15: 12145398-12147397 Physcomitrium patens
Pp3c15_18470 5.0kb upstream 5.0kb upstream 16975 true Chr15: 12147398-12164372 Physcomitrium patens
Pp3c15_18470 5.0kb upstream 5.0kb upstream 5000 false Chr15: 12159373-12164372 Physcomitrium patens
Pp3c15_18470 5.0kb downstream 5.0kb downstream 16975 true Chr15: 12142398-12159372 Physcomitrium patens
Pp3c15_18470 5.0kb downstream 5.0kb downstream 5000 false Chr15: 12142398-12147397 Physcomitrium patens
Pp3c15_18470 10.0kb upstream 10.0kb upstream 21975 true Chr15: 12147398-12169372 Physcomitrium patens
Pp3c15_18470 10.0kb upstream 10.0kb upstream 10000 false Chr15: 12159373-12169372 Physcomitrium patens
Pp3c15_18470 10.0kb downstream 10.0kb downstream 21975 true Chr15: 12137398-12159372 Physcomitrium patens
Pp3c15_18470 10.0kb downstream 10.0kb downstream 10000 false Chr15: 12137398-12147397 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348962 5274 Embryophyte View MSA
123428583 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.224     High High
cufflinks 11.754        
cufflinks 18.147        
cufflinks 18.676       High
cufflinks 8.24       Low
cufflinks 15.366        
cufflinks 17.603        
cufflinks 13.017        
cufflinks 18.351       High
cufflinks 16.588        
cufflinks 16.006        
cufflinks 17.24     High  
cufflinks 18.208        
cufflinks 13.676        
cufflinks 9.628       Low
cufflinks 16.747        
cufflinks 10.89       Low
cufflinks 13.329        
cufflinks 10.303       Low
cufflinks 11.605        
cufflinks 18.158        
cufflinks 19.564     High High
cufflinks 14.237        
cufflinks 10.834       Low
cufflinks 13.847        
cufflinks 9.09       Low
cufflinks 16.377        
cufflinks 13.907        
cufflinks 15.683        
cufflinks 14.853        

0 Strain