Gene : Pp3c15_25690 P. patens v3.3
Defline:  (1 of 1) PTHR16166//PTHR16166:SF87 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 Genomic Order:  1173
Name:  ? Pp3c15_25690 Secondary Identifier:  ? PAC:32928188
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c15_25690 0.5kb upstream 0.5kb upstream 26106 true Chr15: 16723523-16749628 Physcomitrium patens
Pp3c15_25690 0.5kb upstream 0.5kb upstream 500 false Chr15: 16749129-16749628 Physcomitrium patens
Pp3c15_25690 0.5kb downstream 0.5kb downstream 26106 true Chr15: 16723023-16749128 Physcomitrium patens
Pp3c15_25690 0.5kb downstream 0.5kb downstream 500 false Chr15: 16723023-16723522 Physcomitrium patens
Pp3c15_25690 1.0kb upstream 1.0kb upstream 26606 true Chr15: 16723523-16750128 Physcomitrium patens
Pp3c15_25690 1.0kb upstream 1.0kb upstream 1000 false Chr15: 16749129-16750128 Physcomitrium patens
Pp3c15_25690 1.0kb downstream 1.0kb downstream 26606 true Chr15: 16722523-16749128 Physcomitrium patens
Pp3c15_25690 1.0kb downstream 1.0kb downstream 1000 false Chr15: 16722523-16723522 Physcomitrium patens
Pp3c15_25690 2.0kb upstream 2.0kb upstream 27606 true Chr15: 16723523-16751128 Physcomitrium patens
Pp3c15_25690 2.0kb upstream 2.0kb upstream 2000 false Chr15: 16749129-16751128 Physcomitrium patens
Pp3c15_25690 2.0kb downstream 2.0kb downstream 27606 true Chr15: 16721523-16749128 Physcomitrium patens
Pp3c15_25690 2.0kb downstream 2.0kb downstream 2000 false Chr15: 16721523-16723522 Physcomitrium patens
Pp3c15_25690 5.0kb upstream 5.0kb upstream 30606 true Chr15: 16723523-16754128 Physcomitrium patens
Pp3c15_25690 5.0kb upstream 5.0kb upstream 5000 false Chr15: 16749129-16754128 Physcomitrium patens
Pp3c15_25690 5.0kb downstream 5.0kb downstream 30606 true Chr15: 16718523-16749128 Physcomitrium patens
Pp3c15_25690 5.0kb downstream 5.0kb downstream 5000 false Chr15: 16718523-16723522 Physcomitrium patens
Pp3c15_25690 10.0kb upstream 10.0kb upstream 35606 true Chr15: 16723523-16759128 Physcomitrium patens
Pp3c15_25690 10.0kb upstream 10.0kb upstream 10000 false Chr15: 16749129-16759128 Physcomitrium patens
Pp3c15_25690 10.0kb downstream 10.0kb downstream 35606 true Chr15: 16713523-16749128 Physcomitrium patens
Pp3c15_25690 10.0kb downstream 10.0kb downstream 10000 false Chr15: 16713523-16723522 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346115 5274 Embryophyte View MSA
123424266 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 77.167     High  
cufflinks 109.283     High High
cufflinks 89.109     High High
cufflinks 71.884     High  
cufflinks 70.162     High  
cufflinks 47.473     High  
cufflinks 50.592     High  
cufflinks 49.012     High  
cufflinks 156.272     High High
cufflinks 73.05     High  
cufflinks 42.822     High Low
cufflinks 51.417     High  
cufflinks 66.456     High  
cufflinks 109.269     High High
cufflinks 39.807     High Low
cufflinks 79.458     High  
cufflinks 87.791     High  
cufflinks 46.989     High  
cufflinks 38.26     High Low
cufflinks 43.5     High Low
cufflinks 86.132     High  
cufflinks 72.268     High  
cufflinks 75.481     High  
cufflinks 72.773     High  
cufflinks 49.823     High  
cufflinks 82.514     High  
cufflinks 65.407     High  
cufflinks 57.098     High  
cufflinks 47.831     High  
cufflinks 39.732     High Low

0 Strain