Gene : Pp3c16_2100 P. patens v3.3
Defline:  (1 of 2) PTHR11851:SF152 - PROTEIN UCR-2.3 Genomic Order:  108
Name:  ? Pp3c16_2100 Secondary Identifier:  ? PAC:32983813
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_2100 0.5kb upstream 0.5kb upstream 10561 true Chr16: 1378291-1388851 Physcomitrium patens
Pp3c16_2100 0.5kb upstream 0.5kb upstream 500 false Chr16: 1388352-1388851 Physcomitrium patens
Pp3c16_2100 0.5kb downstream 0.5kb downstream 10561 true Chr16: 1377791-1388351 Physcomitrium patens
Pp3c16_2100 0.5kb downstream 0.5kb downstream 500 false Chr16: 1377791-1378290 Physcomitrium patens
Pp3c16_2100 1.0kb upstream 1.0kb upstream 11061 true Chr16: 1378291-1389351 Physcomitrium patens
Pp3c16_2100 1.0kb upstream 1.0kb upstream 1000 false Chr16: 1388352-1389351 Physcomitrium patens
Pp3c16_2100 1.0kb downstream 1.0kb downstream 11061 true Chr16: 1377291-1388351 Physcomitrium patens
Pp3c16_2100 1.0kb downstream 1.0kb downstream 1000 false Chr16: 1377291-1378290 Physcomitrium patens
Pp3c16_2100 2.0kb upstream 2.0kb upstream 12061 true Chr16: 1378291-1390351 Physcomitrium patens
Pp3c16_2100 2.0kb upstream 2.0kb upstream 2000 false Chr16: 1388352-1390351 Physcomitrium patens
Pp3c16_2100 2.0kb downstream 2.0kb downstream 12061 true Chr16: 1376291-1388351 Physcomitrium patens
Pp3c16_2100 2.0kb downstream 2.0kb downstream 2000 false Chr16: 1376291-1378290 Physcomitrium patens
Pp3c16_2100 5.0kb upstream 5.0kb upstream 15061 true Chr16: 1378291-1393351 Physcomitrium patens
Pp3c16_2100 5.0kb upstream 5.0kb upstream 5000 false Chr16: 1388352-1393351 Physcomitrium patens
Pp3c16_2100 5.0kb downstream 5.0kb downstream 15061 true Chr16: 1373291-1388351 Physcomitrium patens
Pp3c16_2100 5.0kb downstream 5.0kb downstream 5000 false Chr16: 1373291-1378290 Physcomitrium patens
Pp3c16_2100 10.0kb upstream 10.0kb upstream 20061 true Chr16: 1378291-1398351 Physcomitrium patens
Pp3c16_2100 10.0kb upstream 10.0kb upstream 10000 false Chr16: 1388352-1398351 Physcomitrium patens
Pp3c16_2100 10.0kb downstream 10.0kb downstream 20061 true Chr16: 1368291-1388351 Physcomitrium patens
Pp3c16_2100 10.0kb downstream 10.0kb downstream 10000 false Chr16: 1368291-1378290 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346655 5274 Embryophyte View MSA
123428815 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 54.473     High  
cufflinks 75.456     High High
cufflinks 108.674     High High
cufflinks 34.035     High  
cufflinks 59.998     High  
cufflinks 32.019     High  
cufflinks 53.836     High  
cufflinks 58.134     High  
cufflinks 28.599     High Low
cufflinks 54.105     High  
cufflinks 41.155     High  
cufflinks 39.227     High  
cufflinks 79.695     High High
cufflinks 59.465     High  
cufflinks 19.21     High Low
cufflinks 56.248     High  
cufflinks 17.928     High Low
cufflinks 52.434     High  
cufflinks 28.355     High Low
cufflinks 55.255     High  
cufflinks 71.913     High High
cufflinks 56.686     High  
cufflinks 42.157     High  
cufflinks 46.619     High  
cufflinks 36.14     High  
cufflinks 36.894     High  
cufflinks 73.648     High High
cufflinks 66.872     High  
cufflinks 52.2     High  
cufflinks 66.902     High  

0 Strain