Gene : Pp3c16_21800 P. patens v3.3
Defline:  (1 of 1) PTHR11669:SF5 - REPLICATION FACTOR C SUBUNIT 2 Genomic Order:  1125
Name:  ? Pp3c16_21800 Secondary Identifier:  ? PAC:32984531
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c16_21800 0.5kb upstream 0.5kb upstream 4207 true Chr16: 13500871-13505077 Physcomitrium patens
Pp3c16_21800 0.5kb upstream 0.5kb upstream 500 false Chr16: 13500871-13501370 Physcomitrium patens
Pp3c16_21800 0.5kb downstream 0.5kb downstream 4207 true Chr16: 13501371-13505577 Physcomitrium patens
Pp3c16_21800 0.5kb downstream 0.5kb downstream 500 false Chr16: 13505078-13505577 Physcomitrium patens
Pp3c16_21800 1.0kb upstream 1.0kb upstream 4707 true Chr16: 13500371-13505077 Physcomitrium patens
Pp3c16_21800 1.0kb upstream 1.0kb upstream 1000 false Chr16: 13500371-13501370 Physcomitrium patens
Pp3c16_21800 1.0kb downstream 1.0kb downstream 4707 true Chr16: 13501371-13506077 Physcomitrium patens
Pp3c16_21800 1.0kb downstream 1.0kb downstream 1000 false Chr16: 13505078-13506077 Physcomitrium patens
Pp3c16_21800 2.0kb upstream 2.0kb upstream 5707 true Chr16: 13499371-13505077 Physcomitrium patens
Pp3c16_21800 2.0kb upstream 2.0kb upstream 2000 false Chr16: 13499371-13501370 Physcomitrium patens
Pp3c16_21800 2.0kb downstream 2.0kb downstream 5707 true Chr16: 13501371-13507077 Physcomitrium patens
Pp3c16_21800 2.0kb downstream 2.0kb downstream 2000 false Chr16: 13505078-13507077 Physcomitrium patens
Pp3c16_21800 5.0kb upstream 5.0kb upstream 8707 true Chr16: 13496371-13505077 Physcomitrium patens
Pp3c16_21800 5.0kb upstream 5.0kb upstream 5000 false Chr16: 13496371-13501370 Physcomitrium patens
Pp3c16_21800 5.0kb downstream 5.0kb downstream 8707 true Chr16: 13501371-13510077 Physcomitrium patens
Pp3c16_21800 5.0kb downstream 5.0kb downstream 5000 false Chr16: 13505078-13510077 Physcomitrium patens
Pp3c16_21800 10.0kb upstream 10.0kb upstream 13707 true Chr16: 13491371-13505077 Physcomitrium patens
Pp3c16_21800 10.0kb upstream 10.0kb upstream 10000 false Chr16: 13491371-13501370 Physcomitrium patens
Pp3c16_21800 10.0kb downstream 10.0kb downstream 13707 true Chr16: 13501371-13515077 Physcomitrium patens
Pp3c16_21800 10.0kb downstream 10.0kb downstream 10000 false Chr16: 13505078-13515077 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346724 5274 Embryophyte View MSA
123424586 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.932     High Low
cufflinks 25.319     High Low
cufflinks 32.17     High  
cufflinks 51.34     High High
cufflinks 40.558     High  
cufflinks 54.156     High High
cufflinks 43.81     High  
cufflinks 43.635     High  
cufflinks 41.46     High  
cufflinks 36.26     High  
cufflinks 42.606     High  
cufflinks 43.244     High  
cufflinks 49.916     High  
cufflinks 42.463     High  
cufflinks 31.931     High  
cufflinks 55.064     High High
cufflinks 39.309     High  
cufflinks 44.917     High  
cufflinks 43.974     High  
cufflinks 14.099     High Low
cufflinks 42.487     High  
cufflinks 49.997     High  
cufflinks 38.841     High  
cufflinks 15.08     High Low
cufflinks 36.657     High  
cufflinks 30.26     High  
cufflinks 37.98     High  
cufflinks 35.63     High  
cufflinks 31.529     High  
cufflinks 41.341     High  

0 Strain