Gene : Pp3c17_3180 P. patens v3.3
Defline:  (1 of 2) KOG0260 - RNA polymerase II, large subunit Genomic Order:  151
Name:  ? Pp3c17_3180 Secondary Identifier:  ? PAC:32907131
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c17_3180 0.5kb upstream 0.5kb upstream 11031 true Chr17: 2507794-2518824 Physcomitrium patens
Pp3c17_3180 0.5kb upstream 0.5kb upstream 500 false Chr17: 2507794-2508293 Physcomitrium patens
Pp3c17_3180 0.5kb downstream 0.5kb downstream 11031 true Chr17: 2508294-2519324 Physcomitrium patens
Pp3c17_3180 0.5kb downstream 0.5kb downstream 500 false Chr17: 2518825-2519324 Physcomitrium patens
Pp3c17_3180 1.0kb upstream 1.0kb upstream 11531 true Chr17: 2507294-2518824 Physcomitrium patens
Pp3c17_3180 1.0kb upstream 1.0kb upstream 1000 false Chr17: 2507294-2508293 Physcomitrium patens
Pp3c17_3180 1.0kb downstream 1.0kb downstream 11531 true Chr17: 2508294-2519824 Physcomitrium patens
Pp3c17_3180 1.0kb downstream 1.0kb downstream 1000 false Chr17: 2518825-2519824 Physcomitrium patens
Pp3c17_3180 2.0kb upstream 2.0kb upstream 12531 true Chr17: 2506294-2518824 Physcomitrium patens
Pp3c17_3180 2.0kb upstream 2.0kb upstream 2000 false Chr17: 2506294-2508293 Physcomitrium patens
Pp3c17_3180 2.0kb downstream 2.0kb downstream 12531 true Chr17: 2508294-2520824 Physcomitrium patens
Pp3c17_3180 2.0kb downstream 2.0kb downstream 2000 false Chr17: 2518825-2520824 Physcomitrium patens
Pp3c17_3180 5.0kb upstream 5.0kb upstream 15531 true Chr17: 2503294-2518824 Physcomitrium patens
Pp3c17_3180 5.0kb upstream 5.0kb upstream 5000 false Chr17: 2503294-2508293 Physcomitrium patens
Pp3c17_3180 5.0kb downstream 5.0kb downstream 15531 true Chr17: 2508294-2523824 Physcomitrium patens
Pp3c17_3180 5.0kb downstream 5.0kb downstream 5000 false Chr17: 2518825-2523824 Physcomitrium patens
Pp3c17_3180 10.0kb upstream 10.0kb upstream 20531 true Chr17: 2498294-2518824 Physcomitrium patens
Pp3c17_3180 10.0kb upstream 10.0kb upstream 10000 false Chr17: 2498294-2508293 Physcomitrium patens
Pp3c17_3180 10.0kb downstream 10.0kb downstream 20531 true Chr17: 2508294-2528824 Physcomitrium patens
Pp3c17_3180 10.0kb downstream 10.0kb downstream 10000 false Chr17: 2518825-2528824 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348824 5274 Embryophyte View MSA
123381031 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.537        
cufflinks 8.543       Low
cufflinks 42.944     High High
cufflinks 35.806     High High
cufflinks 6.467       Low
cufflinks 20.716     High  
cufflinks 57.249     High High
cufflinks 19.477        
cufflinks 8.129       Low
cufflinks 21.326     High  
cufflinks 10.141        
cufflinks 16.551        
cufflinks 21.276     High  
cufflinks 11.203        
cufflinks 7.381       Low
cufflinks 10.532        
cufflinks 16.021        
cufflinks 8.239       Low
cufflinks 15.565        
cufflinks 8.278       Low
cufflinks 19.446        
cufflinks 17.573        
cufflinks 24.418     High  
cufflinks 33.066     High High
cufflinks 19.342        
cufflinks 13.815        
cufflinks 28.664     High  
cufflinks 8.862       Low
cufflinks 17.826        
cufflinks 41.628     High High

0 Strain