Gene : Pp3c17_9560 P. patens v3.3
Genomic Order:  413 Name:  ? Pp3c17_9560
Secondary Identifier:  ? PAC:32907194
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c17_9560 0.5kb upstream 0.5kb upstream 3263 true Chr17: 6914960-6918222 Physcomitrium patens
Pp3c17_9560 0.5kb upstream 0.5kb upstream 500 false Chr17: 6917723-6918222 Physcomitrium patens
Pp3c17_9560 0.5kb downstream 0.5kb downstream 3263 true Chr17: 6914460-6917722 Physcomitrium patens
Pp3c17_9560 0.5kb downstream 0.5kb downstream 500 false Chr17: 6914460-6914959 Physcomitrium patens
Pp3c17_9560 1.0kb upstream 1.0kb upstream 3763 true Chr17: 6914960-6918722 Physcomitrium patens
Pp3c17_9560 1.0kb upstream 1.0kb upstream 1000 false Chr17: 6917723-6918722 Physcomitrium patens
Pp3c17_9560 1.0kb downstream 1.0kb downstream 3763 true Chr17: 6913960-6917722 Physcomitrium patens
Pp3c17_9560 1.0kb downstream 1.0kb downstream 1000 false Chr17: 6913960-6914959 Physcomitrium patens
Pp3c17_9560 2.0kb upstream 2.0kb upstream 4763 true Chr17: 6914960-6919722 Physcomitrium patens
Pp3c17_9560 2.0kb upstream 2.0kb upstream 2000 false Chr17: 6917723-6919722 Physcomitrium patens
Pp3c17_9560 2.0kb downstream 2.0kb downstream 4763 true Chr17: 6912960-6917722 Physcomitrium patens
Pp3c17_9560 2.0kb downstream 2.0kb downstream 2000 false Chr17: 6912960-6914959 Physcomitrium patens
Pp3c17_9560 5.0kb upstream 5.0kb upstream 7763 true Chr17: 6914960-6922722 Physcomitrium patens
Pp3c17_9560 5.0kb upstream 5.0kb upstream 5000 false Chr17: 6917723-6922722 Physcomitrium patens
Pp3c17_9560 5.0kb downstream 5.0kb downstream 7763 true Chr17: 6909960-6917722 Physcomitrium patens
Pp3c17_9560 5.0kb downstream 5.0kb downstream 5000 false Chr17: 6909960-6914959 Physcomitrium patens
Pp3c17_9560 10.0kb upstream 10.0kb upstream 12763 true Chr17: 6914960-6927722 Physcomitrium patens
Pp3c17_9560 10.0kb upstream 10.0kb upstream 10000 false Chr17: 6917723-6927722 Physcomitrium patens
Pp3c17_9560 10.0kb downstream 10.0kb downstream 12763 true Chr17: 6904960-6917722 Physcomitrium patens
Pp3c17_9560 10.0kb downstream 10.0kb downstream 10000 false Chr17: 6904960-6914959 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121326007 5274 Embryophyte Singleton cluster - no MSA
123363055 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.002     Low  
cufflinks 0.002     Low  
cufflinks 0.001     Low Low
cufflinks 0.002     Low  
cufflinks 0.008     Low  
cufflinks 0.005     Low  
cufflinks 0.001     Low Low
cufflinks 0.004     Low  
cufflinks 0.002     Low  
cufflinks 0.023     Low High
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.002     Low  
cufflinks 0.007     Low  
cufflinks 0.002     Low  
cufflinks 0.001     Low Low
cufflinks 0.074     Low High
cufflinks 0.004     Low  
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.001     Low Low
cufflinks 0.002     Low  
cufflinks 0.001     Low Low
cufflinks 0.023     Low High
cufflinks 0.021     Low High
cufflinks 0.014     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain