Gene : Pp3c18_13680 P. patens v3.3
Defline:  (1 of 2) PF02816 - Alpha-kinase family (Alpha_kinase) Genomic Order:  548
Name:  ? Pp3c18_13680 Secondary Identifier:  ? PAC:32982490
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c18_13680 0.5kb upstream 0.5kb upstream 6000 true Chr18: 9866712-9872711 Physcomitrium patens
Pp3c18_13680 0.5kb upstream 0.5kb upstream 500 false Chr18: 9872212-9872711 Physcomitrium patens
Pp3c18_13680 0.5kb downstream 0.5kb downstream 6000 true Chr18: 9866212-9872211 Physcomitrium patens
Pp3c18_13680 0.5kb downstream 0.5kb downstream 500 false Chr18: 9866212-9866711 Physcomitrium patens
Pp3c18_13680 1.0kb upstream 1.0kb upstream 6500 true Chr18: 9866712-9873211 Physcomitrium patens
Pp3c18_13680 1.0kb upstream 1.0kb upstream 1000 false Chr18: 9872212-9873211 Physcomitrium patens
Pp3c18_13680 1.0kb downstream 1.0kb downstream 6500 true Chr18: 9865712-9872211 Physcomitrium patens
Pp3c18_13680 1.0kb downstream 1.0kb downstream 1000 false Chr18: 9865712-9866711 Physcomitrium patens
Pp3c18_13680 2.0kb upstream 2.0kb upstream 7500 true Chr18: 9866712-9874211 Physcomitrium patens
Pp3c18_13680 2.0kb upstream 2.0kb upstream 2000 false Chr18: 9872212-9874211 Physcomitrium patens
Pp3c18_13680 2.0kb downstream 2.0kb downstream 7500 true Chr18: 9864712-9872211 Physcomitrium patens
Pp3c18_13680 2.0kb downstream 2.0kb downstream 2000 false Chr18: 9864712-9866711 Physcomitrium patens
Pp3c18_13680 5.0kb upstream 5.0kb upstream 10500 true Chr18: 9866712-9877211 Physcomitrium patens
Pp3c18_13680 5.0kb upstream 5.0kb upstream 5000 false Chr18: 9872212-9877211 Physcomitrium patens
Pp3c18_13680 5.0kb downstream 5.0kb downstream 10500 true Chr18: 9861712-9872211 Physcomitrium patens
Pp3c18_13680 5.0kb downstream 5.0kb downstream 5000 false Chr18: 9861712-9866711 Physcomitrium patens
Pp3c18_13680 10.0kb upstream 10.0kb upstream 15500 true Chr18: 9866712-9882211 Physcomitrium patens
Pp3c18_13680 10.0kb upstream 10.0kb upstream 10000 false Chr18: 9872212-9882211 Physcomitrium patens
Pp3c18_13680 10.0kb downstream 10.0kb downstream 15500 true Chr18: 9856712-9872211 Physcomitrium patens
Pp3c18_13680 10.0kb downstream 10.0kb downstream 10000 false Chr18: 9856712-9866711 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336888 5274 Embryophyte View MSA
123373691 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 197.214     High High
cufflinks 22.887     High Low
cufflinks 45.844     High  
cufflinks 28.662     High  
cufflinks 25.167     High Low
cufflinks 37.715     High  
cufflinks 32.669     High  
cufflinks 166.681     High High
cufflinks 42.383     High  
cufflinks 350.278     High High
cufflinks 202.638     High High
cufflinks 43.523     High  
cufflinks 45.573     High  
cufflinks 38.413     High  
cufflinks 52.871     High  
cufflinks 30.12     High  
cufflinks 38.57     High  
cufflinks 32.889     High  
cufflinks 320.441     High High
cufflinks 22.81     High Low
cufflinks 37.201     High  
cufflinks 57.848     High  
cufflinks 48.104     High  
cufflinks 289.666     High High
cufflinks 37.043     High  
cufflinks 126.335     High  
cufflinks 43.614     High  
cufflinks 53.52     High  
cufflinks 40.682     High  
cufflinks 35.401     High  

0 Strain