Gene : Pp3c18_16630 P. patens v3.3
Defline:  (1 of 9) PTHR24006:SF428 - CORONATINE-INSENSITIVE PROTEIN 1 Genomic Order:  681
Name:  ? Pp3c18_16630 Secondary Identifier:  ? PAC:32982739
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c18_16630 0.5kb upstream 0.5kb upstream 4215 true Chr18: 11861682-11865896 Physcomitrium patens
Pp3c18_16630 0.5kb upstream 0.5kb upstream 500 false Chr18: 11861682-11862181 Physcomitrium patens
Pp3c18_16630 0.5kb downstream 0.5kb downstream 4215 true Chr18: 11862182-11866396 Physcomitrium patens
Pp3c18_16630 0.5kb downstream 0.5kb downstream 500 false Chr18: 11865897-11866396 Physcomitrium patens
Pp3c18_16630 1.0kb upstream 1.0kb upstream 4715 true Chr18: 11861182-11865896 Physcomitrium patens
Pp3c18_16630 1.0kb upstream 1.0kb upstream 1000 false Chr18: 11861182-11862181 Physcomitrium patens
Pp3c18_16630 1.0kb downstream 1.0kb downstream 4715 true Chr18: 11862182-11866896 Physcomitrium patens
Pp3c18_16630 1.0kb downstream 1.0kb downstream 1000 false Chr18: 11865897-11866896 Physcomitrium patens
Pp3c18_16630 2.0kb upstream 2.0kb upstream 5715 true Chr18: 11860182-11865896 Physcomitrium patens
Pp3c18_16630 2.0kb upstream 2.0kb upstream 2000 false Chr18: 11860182-11862181 Physcomitrium patens
Pp3c18_16630 2.0kb downstream 2.0kb downstream 5715 true Chr18: 11862182-11867896 Physcomitrium patens
Pp3c18_16630 2.0kb downstream 2.0kb downstream 2000 false Chr18: 11865897-11867896 Physcomitrium patens
Pp3c18_16630 5.0kb upstream 5.0kb upstream 8715 true Chr18: 11857182-11865896 Physcomitrium patens
Pp3c18_16630 5.0kb upstream 5.0kb upstream 5000 false Chr18: 11857182-11862181 Physcomitrium patens
Pp3c18_16630 5.0kb downstream 5.0kb downstream 8715 true Chr18: 11862182-11870896 Physcomitrium patens
Pp3c18_16630 5.0kb downstream 5.0kb downstream 5000 false Chr18: 11865897-11870896 Physcomitrium patens
Pp3c18_16630 10.0kb upstream 10.0kb upstream 13715 true Chr18: 11852182-11865896 Physcomitrium patens
Pp3c18_16630 10.0kb upstream 10.0kb upstream 10000 false Chr18: 11852182-11862181 Physcomitrium patens
Pp3c18_16630 10.0kb downstream 10.0kb downstream 13715 true Chr18: 11862182-11875896 Physcomitrium patens
Pp3c18_16630 10.0kb downstream 10.0kb downstream 10000 false Chr18: 11865897-11875896 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342352 5274 Embryophyte View MSA
123378934 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.337       Low
cufflinks 2.202       Low
cufflinks 4.072        
cufflinks 3.937        
cufflinks 4.495        
cufflinks 3.107        
cufflinks 4.149        
cufflinks 4.539        
cufflinks 3.244        
cufflinks 7.368       High
cufflinks 2.156       Low
cufflinks 4.677        
cufflinks 6.712       High
cufflinks 4.379        
cufflinks 4.76        
cufflinks 4.204        
cufflinks 3.891        
cufflinks 4.198        
cufflinks 4.726        
cufflinks 6.432       High
cufflinks 2.213       Low
cufflinks 4.111        
cufflinks 3.848        
cufflinks 4.595        
cufflinks 2.163       Low
cufflinks 5.011        
cufflinks 4.19        
cufflinks 6.587       High
cufflinks 4.649        
cufflinks 5.472        

0 Strain