Gene : Pp3c18_18510 P. patens v3.3
Defline:  (1 of 1) PTHR13068:SF3 - MTERF DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL Genomic Order:  740
Name:  ? Pp3c18_18510 Secondary Identifier:  ? PAC:32983105
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c18_18510 0.5kb upstream 0.5kb upstream 5028 true Chr18: 13252560-13257587 Physcomitrium patens
Pp3c18_18510 0.5kb upstream 0.5kb upstream 500 false Chr18: 13252560-13253059 Physcomitrium patens
Pp3c18_18510 0.5kb downstream 0.5kb downstream 5028 true Chr18: 13253060-13258087 Physcomitrium patens
Pp3c18_18510 0.5kb downstream 0.5kb downstream 500 false Chr18: 13257588-13258087 Physcomitrium patens
Pp3c18_18510 1.0kb upstream 1.0kb upstream 5528 true Chr18: 13252060-13257587 Physcomitrium patens
Pp3c18_18510 1.0kb upstream 1.0kb upstream 1000 false Chr18: 13252060-13253059 Physcomitrium patens
Pp3c18_18510 1.0kb downstream 1.0kb downstream 5528 true Chr18: 13253060-13258587 Physcomitrium patens
Pp3c18_18510 1.0kb downstream 1.0kb downstream 1000 false Chr18: 13257588-13258587 Physcomitrium patens
Pp3c18_18510 2.0kb upstream 2.0kb upstream 6528 true Chr18: 13251060-13257587 Physcomitrium patens
Pp3c18_18510 2.0kb upstream 2.0kb upstream 2000 false Chr18: 13251060-13253059 Physcomitrium patens
Pp3c18_18510 2.0kb downstream 2.0kb downstream 6528 true Chr18: 13253060-13259587 Physcomitrium patens
Pp3c18_18510 2.0kb downstream 2.0kb downstream 2000 false Chr18: 13257588-13259587 Physcomitrium patens
Pp3c18_18510 5.0kb upstream 5.0kb upstream 9528 true Chr18: 13248060-13257587 Physcomitrium patens
Pp3c18_18510 5.0kb upstream 5.0kb upstream 5000 false Chr18: 13248060-13253059 Physcomitrium patens
Pp3c18_18510 5.0kb downstream 5.0kb downstream 9528 true Chr18: 13253060-13262587 Physcomitrium patens
Pp3c18_18510 5.0kb downstream 5.0kb downstream 5000 false Chr18: 13257588-13262587 Physcomitrium patens
Pp3c18_18510 10.0kb upstream 10.0kb upstream 14528 true Chr18: 13243060-13257587 Physcomitrium patens
Pp3c18_18510 10.0kb upstream 10.0kb upstream 10000 false Chr18: 13243060-13253059 Physcomitrium patens
Pp3c18_18510 10.0kb downstream 10.0kb downstream 14528 true Chr18: 13253060-13267587 Physcomitrium patens
Pp3c18_18510 10.0kb downstream 10.0kb downstream 10000 false Chr18: 13257588-13267587 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345180 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.097       Low
cufflinks 5.787        
cufflinks 4.05        
cufflinks 9.517       High
cufflinks 6.945        
cufflinks 7.753       High
cufflinks 5.727        
cufflinks 8.352       High
cufflinks 8.824       High
cufflinks 8.172       High
cufflinks 4.146        
cufflinks 2.605       Low
cufflinks 5.768        
cufflinks 5.269        
cufflinks 8.786       High
cufflinks 3.821        
cufflinks 2.381       Low
cufflinks 7.588        
cufflinks 4.034        
cufflinks 7.574        
cufflinks 6.215        
cufflinks 4.892        
cufflinks 6.235        
cufflinks 6.701        
cufflinks 2.794       Low
cufflinks 4.2        
cufflinks 3.468        
cufflinks 3.532        
cufflinks 3.604        
cufflinks 5.074        

0 Strain