Gene : Pp3c19_19130 P. patens v3.3
Defline:  (1 of 3) 3.4.24.85 - S2P endopeptidase / Sterol-regulatory element-binding proteins intramembrane protease Genomic Order:  875
Name:  ? Pp3c19_19130 Secondary Identifier:  ? PAC:32939004
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c19_19130 0.5kb upstream 0.5kb upstream 2558 true Chr19: 12690499-12693056 Physcomitrium patens
Pp3c19_19130 0.5kb upstream 0.5kb upstream 500 false Chr19: 12690499-12690998 Physcomitrium patens
Pp3c19_19130 0.5kb downstream 0.5kb downstream 2558 true Chr19: 12690999-12693556 Physcomitrium patens
Pp3c19_19130 0.5kb downstream 0.5kb downstream 500 false Chr19: 12693057-12693556 Physcomitrium patens
Pp3c19_19130 1.0kb upstream 1.0kb upstream 3058 true Chr19: 12689999-12693056 Physcomitrium patens
Pp3c19_19130 1.0kb upstream 1.0kb upstream 1000 false Chr19: 12689999-12690998 Physcomitrium patens
Pp3c19_19130 1.0kb downstream 1.0kb downstream 3058 true Chr19: 12690999-12694056 Physcomitrium patens
Pp3c19_19130 1.0kb downstream 1.0kb downstream 1000 false Chr19: 12693057-12694056 Physcomitrium patens
Pp3c19_19130 2.0kb upstream 2.0kb upstream 4058 true Chr19: 12688999-12693056 Physcomitrium patens
Pp3c19_19130 2.0kb upstream 2.0kb upstream 2000 false Chr19: 12688999-12690998 Physcomitrium patens
Pp3c19_19130 2.0kb downstream 2.0kb downstream 4058 true Chr19: 12690999-12695056 Physcomitrium patens
Pp3c19_19130 2.0kb downstream 2.0kb downstream 2000 false Chr19: 12693057-12695056 Physcomitrium patens
Pp3c19_19130 5.0kb upstream 5.0kb upstream 7058 true Chr19: 12685999-12693056 Physcomitrium patens
Pp3c19_19130 5.0kb upstream 5.0kb upstream 5000 false Chr19: 12685999-12690998 Physcomitrium patens
Pp3c19_19130 5.0kb downstream 5.0kb downstream 7058 true Chr19: 12690999-12698056 Physcomitrium patens
Pp3c19_19130 5.0kb downstream 5.0kb downstream 5000 false Chr19: 12693057-12698056 Physcomitrium patens
Pp3c19_19130 10.0kb upstream 10.0kb upstream 12058 true Chr19: 12680999-12693056 Physcomitrium patens
Pp3c19_19130 10.0kb upstream 10.0kb upstream 10000 false Chr19: 12680999-12690998 Physcomitrium patens
Pp3c19_19130 10.0kb downstream 10.0kb downstream 12058 true Chr19: 12690999-12703056 Physcomitrium patens
Pp3c19_19130 10.0kb downstream 10.0kb downstream 10000 false Chr19: 12693057-12703056 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347975 5274 Embryophyte View MSA
123424345 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.975        
cufflinks 12.464        
cufflinks 12.927        
cufflinks 7.183       Low
cufflinks 8.669        
cufflinks 15.253       High
cufflinks 6.925       Low
cufflinks 13.665        
cufflinks 8.272        
cufflinks 10.585        
cufflinks 10.435        
cufflinks 9.583        
cufflinks 17.233       High
cufflinks 7.249       Low
cufflinks 11.689        
cufflinks 10.442        
cufflinks 8.202        
cufflinks 12.386        
cufflinks 7.845        
cufflinks 10.976        
cufflinks 10.565        
cufflinks 24.583     High High
cufflinks 12.144        
cufflinks 6.936       Low
cufflinks 9.679        
cufflinks 24.109     High High
cufflinks 9.42        
cufflinks 5.564       Low
cufflinks 9.748        
cufflinks 8.315        

0 Strain