Gene : Pp3c19_11440 P. patens v3.3
Defline:  (1 of 2) 4.2.1.104 - Cyanase / Cyanate lyase Genomic Order:  557
Name:  ? Pp3c19_11440 Secondary Identifier:  ? PAC:32939865
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens CYANCAT-PWY Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c19_11440 0.5kb upstream 0.5kb upstream 3057 true Chr19: 7296622-7299678 Physcomitrium patens
Pp3c19_11440 0.5kb upstream 0.5kb upstream 500 false Chr19: 7296622-7297121 Physcomitrium patens
Pp3c19_11440 0.5kb downstream 0.5kb downstream 3057 true Chr19: 7297122-7300178 Physcomitrium patens
Pp3c19_11440 0.5kb downstream 0.5kb downstream 500 false Chr19: 7299679-7300178 Physcomitrium patens
Pp3c19_11440 1.0kb upstream 1.0kb upstream 3557 true Chr19: 7296122-7299678 Physcomitrium patens
Pp3c19_11440 1.0kb upstream 1.0kb upstream 1000 false Chr19: 7296122-7297121 Physcomitrium patens
Pp3c19_11440 1.0kb downstream 1.0kb downstream 3557 true Chr19: 7297122-7300678 Physcomitrium patens
Pp3c19_11440 1.0kb downstream 1.0kb downstream 1000 false Chr19: 7299679-7300678 Physcomitrium patens
Pp3c19_11440 2.0kb upstream 2.0kb upstream 4557 true Chr19: 7295122-7299678 Physcomitrium patens
Pp3c19_11440 2.0kb upstream 2.0kb upstream 2000 false Chr19: 7295122-7297121 Physcomitrium patens
Pp3c19_11440 2.0kb downstream 2.0kb downstream 4557 true Chr19: 7297122-7301678 Physcomitrium patens
Pp3c19_11440 2.0kb downstream 2.0kb downstream 2000 false Chr19: 7299679-7301678 Physcomitrium patens
Pp3c19_11440 5.0kb upstream 5.0kb upstream 7557 true Chr19: 7292122-7299678 Physcomitrium patens
Pp3c19_11440 5.0kb upstream 5.0kb upstream 5000 false Chr19: 7292122-7297121 Physcomitrium patens
Pp3c19_11440 5.0kb downstream 5.0kb downstream 7557 true Chr19: 7297122-7304678 Physcomitrium patens
Pp3c19_11440 5.0kb downstream 5.0kb downstream 5000 false Chr19: 7299679-7304678 Physcomitrium patens
Pp3c19_11440 10.0kb upstream 10.0kb upstream 12557 true Chr19: 7287122-7299678 Physcomitrium patens
Pp3c19_11440 10.0kb upstream 10.0kb upstream 10000 false Chr19: 7287122-7297121 Physcomitrium patens
Pp3c19_11440 10.0kb downstream 10.0kb downstream 12557 true Chr19: 7297122-7309678 Physcomitrium patens
Pp3c19_11440 10.0kb downstream 10.0kb downstream 10000 false Chr19: 7299679-7309678 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346381 5274 Embryophyte View MSA
123424096 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.009        
cufflinks 17.013        
cufflinks 4.726       Low
cufflinks 14.792        
cufflinks 21.749     High High
cufflinks 16.045        
cufflinks 10.819        
cufflinks 12.209        
cufflinks 37.334     High High
cufflinks 26.056     High High
cufflinks 14.363        
cufflinks 3.654       Low
cufflinks 20.323        
cufflinks 8.008        
cufflinks 7.434        
cufflinks 10.064        
cufflinks 11.497        
cufflinks 8.355        
cufflinks 7.692        
cufflinks 9.089        
cufflinks 10.157        
cufflinks 75.302     High High
cufflinks 6.762        
cufflinks 14.308     High  
cufflinks 11.063        
cufflinks 14.588        
cufflinks 11.067        
cufflinks 8.915        
cufflinks 2.915       Low
cufflinks 4.538       Low

0 Strain