Gene : Pp3c20_13790 P. patens v3.3
Genomic Order:  660 Name:  ? Pp3c20_13790
Secondary Identifier:  ? PAC:32946759
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_13790 0.5kb upstream 0.5kb upstream 3341 true Chr20: 8963694-8967034 Physcomitrium patens
Pp3c20_13790 0.5kb upstream 0.5kb upstream 500 false Chr20: 8966535-8967034 Physcomitrium patens
Pp3c20_13790 0.5kb downstream 0.5kb downstream 3341 true Chr20: 8963194-8966534 Physcomitrium patens
Pp3c20_13790 0.5kb downstream 0.5kb downstream 500 false Chr20: 8963194-8963693 Physcomitrium patens
Pp3c20_13790 1.0kb upstream 1.0kb upstream 3841 true Chr20: 8963694-8967534 Physcomitrium patens
Pp3c20_13790 1.0kb upstream 1.0kb upstream 1000 false Chr20: 8966535-8967534 Physcomitrium patens
Pp3c20_13790 1.0kb downstream 1.0kb downstream 3841 true Chr20: 8962694-8966534 Physcomitrium patens
Pp3c20_13790 1.0kb downstream 1.0kb downstream 1000 false Chr20: 8962694-8963693 Physcomitrium patens
Pp3c20_13790 2.0kb upstream 2.0kb upstream 4841 true Chr20: 8963694-8968534 Physcomitrium patens
Pp3c20_13790 2.0kb upstream 2.0kb upstream 2000 false Chr20: 8966535-8968534 Physcomitrium patens
Pp3c20_13790 2.0kb downstream 2.0kb downstream 4841 true Chr20: 8961694-8966534 Physcomitrium patens
Pp3c20_13790 2.0kb downstream 2.0kb downstream 2000 false Chr20: 8961694-8963693 Physcomitrium patens
Pp3c20_13790 5.0kb upstream 5.0kb upstream 7841 true Chr20: 8963694-8971534 Physcomitrium patens
Pp3c20_13790 5.0kb upstream 5.0kb upstream 5000 false Chr20: 8966535-8971534 Physcomitrium patens
Pp3c20_13790 5.0kb downstream 5.0kb downstream 7841 true Chr20: 8958694-8966534 Physcomitrium patens
Pp3c20_13790 5.0kb downstream 5.0kb downstream 5000 false Chr20: 8958694-8963693 Physcomitrium patens
Pp3c20_13790 10.0kb upstream 10.0kb upstream 12841 true Chr20: 8963694-8976534 Physcomitrium patens
Pp3c20_13790 10.0kb upstream 10.0kb upstream 10000 false Chr20: 8966535-8976534 Physcomitrium patens
Pp3c20_13790 10.0kb downstream 10.0kb downstream 12841 true Chr20: 8953694-8966534 Physcomitrium patens
Pp3c20_13790 10.0kb downstream 10.0kb downstream 10000 false Chr20: 8953694-8963693 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348686 5274 Embryophyte View MSA
123380972 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.868        
cufflinks 11.379        
cufflinks 16.533       High
cufflinks 7.212       Low
cufflinks 12.202        
cufflinks 6.322       Low
cufflinks 10.813        
cufflinks 11.458        
cufflinks 7.377       Low
cufflinks 11.631        
cufflinks 12.28        
cufflinks 12.545        
cufflinks 10.376        
cufflinks 21.125       High
cufflinks 11.912        
cufflinks 15.602       High
cufflinks 14.039        
cufflinks 13.714        
cufflinks 16.571       High
cufflinks 14.681        
cufflinks 12.005        
cufflinks 5.153       Low
cufflinks 10.927        
cufflinks 10.262        
cufflinks 7.096       Low
cufflinks 8.45        
cufflinks 11.083        
cufflinks 11.517        
cufflinks 15.75       High
cufflinks 9.772        

0 Strain