Gene : Pp3c19_19290 P. patens v3.3
Defline:  (1 of 27) PF14223 - gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  885
Name:  ? Pp3c19_19290 Secondary Identifier:  ? PAC:32939884
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c19_19290 0.5kb upstream 0.5kb upstream 2478 true Chr19: 12827256-12829733 Physcomitrium patens
Pp3c19_19290 0.5kb upstream 0.5kb upstream 500 false Chr19: 12827256-12827755 Physcomitrium patens
Pp3c19_19290 0.5kb downstream 0.5kb downstream 2478 true Chr19: 12827756-12830233 Physcomitrium patens
Pp3c19_19290 0.5kb downstream 0.5kb downstream 500 false Chr19: 12829734-12830233 Physcomitrium patens
Pp3c19_19290 1.0kb upstream 1.0kb upstream 2978 true Chr19: 12826756-12829733 Physcomitrium patens
Pp3c19_19290 1.0kb upstream 1.0kb upstream 1000 false Chr19: 12826756-12827755 Physcomitrium patens
Pp3c19_19290 1.0kb downstream 1.0kb downstream 2978 true Chr19: 12827756-12830733 Physcomitrium patens
Pp3c19_19290 1.0kb downstream 1.0kb downstream 1000 false Chr19: 12829734-12830733 Physcomitrium patens
Pp3c19_19290 2.0kb upstream 2.0kb upstream 3978 true Chr19: 12825756-12829733 Physcomitrium patens
Pp3c19_19290 2.0kb upstream 2.0kb upstream 2000 false Chr19: 12825756-12827755 Physcomitrium patens
Pp3c19_19290 2.0kb downstream 2.0kb downstream 3978 true Chr19: 12827756-12831733 Physcomitrium patens
Pp3c19_19290 2.0kb downstream 2.0kb downstream 2000 false Chr19: 12829734-12831733 Physcomitrium patens
Pp3c19_19290 5.0kb upstream 5.0kb upstream 6978 true Chr19: 12822756-12829733 Physcomitrium patens
Pp3c19_19290 5.0kb upstream 5.0kb upstream 5000 false Chr19: 12822756-12827755 Physcomitrium patens
Pp3c19_19290 5.0kb downstream 5.0kb downstream 6978 true Chr19: 12827756-12834733 Physcomitrium patens
Pp3c19_19290 5.0kb downstream 5.0kb downstream 5000 false Chr19: 12829734-12834733 Physcomitrium patens
Pp3c19_19290 10.0kb upstream 10.0kb upstream 11978 true Chr19: 12817756-12829733 Physcomitrium patens
Pp3c19_19290 10.0kb upstream 10.0kb upstream 10000 false Chr19: 12817756-12827755 Physcomitrium patens
Pp3c19_19290 10.0kb downstream 10.0kb downstream 11978 true Chr19: 12827756-12839733 Physcomitrium patens
Pp3c19_19290 10.0kb downstream 10.0kb downstream 10000 false Chr19: 12829734-12839733 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336934 5274 Embryophyte View MSA
123373736 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.091       Low
cufflinks 0.178        
cufflinks 0.307        
cufflinks 0.575        
cufflinks 0.866       High
cufflinks 0.333        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.259        
cufflinks 0.704       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.069       High
cufflinks 0.25        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.096       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.456        
cufflinks 0.115       Low
cufflinks 0.129       Low
cufflinks 0.219        
cufflinks 0.23        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.237        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.139        

0 Strain