Gene : Pp3c19_10820 P. patens v3.3
Defline:  (1 of 9) PTHR23515:SF3 - HIGH AFFINITY NITRATE TRANSPORTER 2.5 Genomic Order:  537
Name:  ? Pp3c19_10820 Secondary Identifier:  ? PAC:32937680
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c19_10820 0.5kb upstream 0.5kb upstream 4596 true Chr19: 6816803-6821398 Physcomitrium patens
Pp3c19_10820 0.5kb upstream 0.5kb upstream 500 false Chr19: 6816803-6817302 Physcomitrium patens
Pp3c19_10820 0.5kb downstream 0.5kb downstream 4596 true Chr19: 6817303-6821898 Physcomitrium patens
Pp3c19_10820 0.5kb downstream 0.5kb downstream 500 false Chr19: 6821399-6821898 Physcomitrium patens
Pp3c19_10820 1.0kb upstream 1.0kb upstream 5096 true Chr19: 6816303-6821398 Physcomitrium patens
Pp3c19_10820 1.0kb upstream 1.0kb upstream 1000 false Chr19: 6816303-6817302 Physcomitrium patens
Pp3c19_10820 1.0kb downstream 1.0kb downstream 5096 true Chr19: 6817303-6822398 Physcomitrium patens
Pp3c19_10820 1.0kb downstream 1.0kb downstream 1000 false Chr19: 6821399-6822398 Physcomitrium patens
Pp3c19_10820 2.0kb upstream 2.0kb upstream 6096 true Chr19: 6815303-6821398 Physcomitrium patens
Pp3c19_10820 2.0kb upstream 2.0kb upstream 2000 false Chr19: 6815303-6817302 Physcomitrium patens
Pp3c19_10820 2.0kb downstream 2.0kb downstream 6096 true Chr19: 6817303-6823398 Physcomitrium patens
Pp3c19_10820 2.0kb downstream 2.0kb downstream 2000 false Chr19: 6821399-6823398 Physcomitrium patens
Pp3c19_10820 5.0kb upstream 5.0kb upstream 9096 true Chr19: 6812303-6821398 Physcomitrium patens
Pp3c19_10820 5.0kb upstream 5.0kb upstream 5000 false Chr19: 6812303-6817302 Physcomitrium patens
Pp3c19_10820 5.0kb downstream 5.0kb downstream 9096 true Chr19: 6817303-6826398 Physcomitrium patens
Pp3c19_10820 5.0kb downstream 5.0kb downstream 5000 false Chr19: 6821399-6826398 Physcomitrium patens
Pp3c19_10820 10.0kb upstream 10.0kb upstream 14096 true Chr19: 6807303-6821398 Physcomitrium patens
Pp3c19_10820 10.0kb upstream 10.0kb upstream 10000 false Chr19: 6807303-6817302 Physcomitrium patens
Pp3c19_10820 10.0kb downstream 10.0kb downstream 14096 true Chr19: 6817303-6831398 Physcomitrium patens
Pp3c19_10820 10.0kb downstream 10.0kb downstream 10000 false Chr19: 6821399-6831398 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121350710 5274 Embryophyte View MSA
123426832 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.037     Low  
cufflinks 0.002     Low Low
cufflinks 0.12       High
cufflinks 0.075     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.058     Low  
cufflinks 0.028     Low  
cufflinks 0.002     Low Low
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low  
cufflinks 0.037     Low  
cufflinks 0.118       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low  
cufflinks 0.005     Low  
cufflinks 0.005     Low  
cufflinks 0.028     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.264       High
cufflinks 0.11       High
cufflinks 0.021     Low  
cufflinks 0.004     Low  
cufflinks 0.041     Low  

0 Strain