Gene : Pp3c20_2440 P. patens v3.3
Defline:  (1 of 2) PTHR31412:SF2 - ZINC METALLOPEPTIDASE EGY3, CHLOROPLASTIC-RELATED Genomic Order:  146
Name:  ? Pp3c20_2440 Secondary Identifier:  ? PAC:32945926
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_2440 0.5kb upstream 0.5kb upstream 3901 true Chr20: 1323805-1327705 Physcomitrium patens
Pp3c20_2440 0.5kb upstream 0.5kb upstream 500 false Chr20: 1323805-1324304 Physcomitrium patens
Pp3c20_2440 0.5kb downstream 0.5kb downstream 3901 true Chr20: 1324305-1328205 Physcomitrium patens
Pp3c20_2440 0.5kb downstream 0.5kb downstream 500 false Chr20: 1327706-1328205 Physcomitrium patens
Pp3c20_2440 1.0kb upstream 1.0kb upstream 4401 true Chr20: 1323305-1327705 Physcomitrium patens
Pp3c20_2440 1.0kb upstream 1.0kb upstream 1000 false Chr20: 1323305-1324304 Physcomitrium patens
Pp3c20_2440 1.0kb downstream 1.0kb downstream 4401 true Chr20: 1324305-1328705 Physcomitrium patens
Pp3c20_2440 1.0kb downstream 1.0kb downstream 1000 false Chr20: 1327706-1328705 Physcomitrium patens
Pp3c20_2440 2.0kb upstream 2.0kb upstream 5401 true Chr20: 1322305-1327705 Physcomitrium patens
Pp3c20_2440 2.0kb upstream 2.0kb upstream 2000 false Chr20: 1322305-1324304 Physcomitrium patens
Pp3c20_2440 2.0kb downstream 2.0kb downstream 5401 true Chr20: 1324305-1329705 Physcomitrium patens
Pp3c20_2440 2.0kb downstream 2.0kb downstream 2000 false Chr20: 1327706-1329705 Physcomitrium patens
Pp3c20_2440 5.0kb upstream 5.0kb upstream 8401 true Chr20: 1319305-1327705 Physcomitrium patens
Pp3c20_2440 5.0kb upstream 5.0kb upstream 5000 false Chr20: 1319305-1324304 Physcomitrium patens
Pp3c20_2440 5.0kb downstream 5.0kb downstream 8401 true Chr20: 1324305-1332705 Physcomitrium patens
Pp3c20_2440 5.0kb downstream 5.0kb downstream 5000 false Chr20: 1327706-1332705 Physcomitrium patens
Pp3c20_2440 10.0kb upstream 10.0kb upstream 13401 true Chr20: 1314305-1327705 Physcomitrium patens
Pp3c20_2440 10.0kb upstream 10.0kb upstream 10000 false Chr20: 1314305-1324304 Physcomitrium patens
Pp3c20_2440 10.0kb downstream 10.0kb downstream 13401 true Chr20: 1324305-1337705 Physcomitrium patens
Pp3c20_2440 10.0kb downstream 10.0kb downstream 10000 false Chr20: 1327706-1337705 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347143 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.004     Low Low
cufflinks 0.008     Low  
cufflinks 0.005     Low Low
cufflinks 0.091     Low  
cufflinks 2.45       High
cufflinks 0.029     Low  
cufflinks 1.215       High
cufflinks 0.017     Low  
cufflinks 0.046     Low  
cufflinks 0.008     Low  
cufflinks 0.025     Low  
cufflinks 0.506       High
cufflinks 0.018     Low  
cufflinks 0.03     Low  
cufflinks 0.014     Low  
cufflinks 0.024     Low  
cufflinks 0.021     Low  
cufflinks 0.038     Low  
cufflinks 0.038     Low  
cufflinks 0.006     Low  
cufflinks 0.013     Low  
cufflinks 4.215       High
cufflinks 2.635       High
cufflinks 0.089     Low  
cufflinks 0.073     Low  
cufflinks 0.007     Low  
cufflinks 0.017     Low  
cufflinks 0.002     Low Low
cufflinks 0.059     Low  
cufflinks 0.007     Low  

0 Strain