Gene : Pp3c20_4970 P. patens v3.3
Defline:  (1 of 2) PTHR14237:SF30 - MITOCHONDRIAL AMIDOXIME-REDUCING COMPONENT 1 Genomic Order:  263
Name:  ? Pp3c20_4970 Secondary Identifier:  ? PAC:32946409
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-5963 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_4970 0.5kb upstream 0.5kb upstream 4229 true Chr20: 3008019-3012247 Physcomitrium patens
Pp3c20_4970 0.5kb upstream 0.5kb upstream 500 false Chr20: 3011748-3012247 Physcomitrium patens
Pp3c20_4970 0.5kb downstream 0.5kb downstream 4229 true Chr20: 3007519-3011747 Physcomitrium patens
Pp3c20_4970 0.5kb downstream 0.5kb downstream 500 false Chr20: 3007519-3008018 Physcomitrium patens
Pp3c20_4970 1.0kb upstream 1.0kb upstream 4729 true Chr20: 3008019-3012747 Physcomitrium patens
Pp3c20_4970 1.0kb upstream 1.0kb upstream 1000 false Chr20: 3011748-3012747 Physcomitrium patens
Pp3c20_4970 1.0kb downstream 1.0kb downstream 4729 true Chr20: 3007019-3011747 Physcomitrium patens
Pp3c20_4970 1.0kb downstream 1.0kb downstream 1000 false Chr20: 3007019-3008018 Physcomitrium patens
Pp3c20_4970 2.0kb upstream 2.0kb upstream 5729 true Chr20: 3008019-3013747 Physcomitrium patens
Pp3c20_4970 2.0kb upstream 2.0kb upstream 2000 false Chr20: 3011748-3013747 Physcomitrium patens
Pp3c20_4970 2.0kb downstream 2.0kb downstream 5729 true Chr20: 3006019-3011747 Physcomitrium patens
Pp3c20_4970 2.0kb downstream 2.0kb downstream 2000 false Chr20: 3006019-3008018 Physcomitrium patens
Pp3c20_4970 5.0kb upstream 5.0kb upstream 8729 true Chr20: 3008019-3016747 Physcomitrium patens
Pp3c20_4970 5.0kb upstream 5.0kb upstream 5000 false Chr20: 3011748-3016747 Physcomitrium patens
Pp3c20_4970 5.0kb downstream 5.0kb downstream 8729 true Chr20: 3003019-3011747 Physcomitrium patens
Pp3c20_4970 5.0kb downstream 5.0kb downstream 5000 false Chr20: 3003019-3008018 Physcomitrium patens
Pp3c20_4970 10.0kb upstream 10.0kb upstream 13729 true Chr20: 3008019-3021747 Physcomitrium patens
Pp3c20_4970 10.0kb upstream 10.0kb upstream 10000 false Chr20: 3011748-3021747 Physcomitrium patens
Pp3c20_4970 10.0kb downstream 10.0kb downstream 13729 true Chr20: 2998019-3011747 Physcomitrium patens
Pp3c20_4970 10.0kb downstream 10.0kb downstream 10000 false Chr20: 2998019-3008018 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123428941 5275 Viridiplantae View MSA
121347613 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.211        
cufflinks 3.833        
cufflinks 2.221        
cufflinks 4.072        
cufflinks 2.357        
cufflinks 5.604        
cufflinks 0.99       Low
cufflinks 3.528        
cufflinks 2.962        
cufflinks 4.026        
cufflinks 5.209        
cufflinks 2.268        
cufflinks 3.616        
cufflinks 2.639        
cufflinks 4.937        
cufflinks 2.486        
cufflinks 4.264        
cufflinks 2.862        
cufflinks 0.788       Low
cufflinks 6.168       High
cufflinks 4.902        
cufflinks 2.204        
cufflinks 0.925       Low
cufflinks 3.519        
cufflinks 2.768        
cufflinks 6.404       High
cufflinks 6.708       High
cufflinks 0.748       Low
cufflinks 4.274        
cufflinks 2.012        

0 Strain