Gene : Pp3c20_19770 P. patens v3.3
Defline:  (1 of 4) PTHR24148:SF6 - ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39 HOMOLOG Genomic Order:  918
Name:  ? Pp3c20_19770 Secondary Identifier:  ? PAC:32945936
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_19770 0.5kb upstream 0.5kb upstream 8017 true Chr20: 12833050-12841066 Physcomitrium patens
Pp3c20_19770 0.5kb upstream 0.5kb upstream 500 false Chr20: 12833050-12833549 Physcomitrium patens
Pp3c20_19770 0.5kb downstream 0.5kb downstream 8017 true Chr20: 12833550-12841566 Physcomitrium patens
Pp3c20_19770 0.5kb downstream 0.5kb downstream 500 false Chr20: 12841067-12841566 Physcomitrium patens
Pp3c20_19770 1.0kb upstream 1.0kb upstream 8517 true Chr20: 12832550-12841066 Physcomitrium patens
Pp3c20_19770 1.0kb upstream 1.0kb upstream 1000 false Chr20: 12832550-12833549 Physcomitrium patens
Pp3c20_19770 1.0kb downstream 1.0kb downstream 8517 true Chr20: 12833550-12842066 Physcomitrium patens
Pp3c20_19770 1.0kb downstream 1.0kb downstream 1000 false Chr20: 12841067-12842066 Physcomitrium patens
Pp3c20_19770 2.0kb upstream 2.0kb upstream 9517 true Chr20: 12831550-12841066 Physcomitrium patens
Pp3c20_19770 2.0kb upstream 2.0kb upstream 2000 false Chr20: 12831550-12833549 Physcomitrium patens
Pp3c20_19770 2.0kb downstream 2.0kb downstream 9517 true Chr20: 12833550-12843066 Physcomitrium patens
Pp3c20_19770 2.0kb downstream 2.0kb downstream 2000 false Chr20: 12841067-12843066 Physcomitrium patens
Pp3c20_19770 5.0kb upstream 5.0kb upstream 12517 true Chr20: 12828550-12841066 Physcomitrium patens
Pp3c20_19770 5.0kb upstream 5.0kb upstream 5000 false Chr20: 12828550-12833549 Physcomitrium patens
Pp3c20_19770 5.0kb downstream 5.0kb downstream 12517 true Chr20: 12833550-12846066 Physcomitrium patens
Pp3c20_19770 5.0kb downstream 5.0kb downstream 5000 false Chr20: 12841067-12846066 Physcomitrium patens
Pp3c20_19770 10.0kb upstream 10.0kb upstream 17517 true Chr20: 12823550-12841066 Physcomitrium patens
Pp3c20_19770 10.0kb upstream 10.0kb upstream 10000 false Chr20: 12823550-12833549 Physcomitrium patens
Pp3c20_19770 10.0kb downstream 10.0kb downstream 17517 true Chr20: 12833550-12851066 Physcomitrium patens
Pp3c20_19770 10.0kb downstream 10.0kb downstream 10000 false Chr20: 12841067-12851066 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121337069 5274 Embryophyte View MSA
123373869 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.854       Low
cufflinks 0.643       Low
cufflinks 1.494        
cufflinks 1.551        
cufflinks 1.976        
cufflinks 1.082        
cufflinks 1.399        
cufflinks 1.203        
cufflinks 1.59        
cufflinks 1.389        
cufflinks 1.192        
cufflinks 2.37       High
cufflinks 1.935        
cufflinks 1.683        
cufflinks 1.649        
cufflinks 2.2       High
cufflinks 1.925        
cufflinks 0.499       Low
cufflinks 1.117        
cufflinks 1.544        
cufflinks 2.75       High
cufflinks 2.324       High
cufflinks 1.861        
cufflinks 0.5       Low
cufflinks 1.899        
cufflinks 1.696        
cufflinks 1.708        
cufflinks 2.09        
cufflinks 1.129        
cufflinks 1.724        

0 Strain