Gene : Pp3c20_19940 P. patens v3.3
Defline:  (1 of 3) PF00122//PF00689//PF00690//PF00702 - E1-E2 ATPase (E1-E2_ATPase) // Cation transporting ATPase, C-terminus (Cation_ATPase_C) // Cation transporter/ATPase, N-terminus (Cation_ATPase_N) // haloacid dehalogenase-like hydrolase (Hydrolase) Genomic Order:  924
Name:  ? Pp3c20_19940 Secondary Identifier:  ? PAC:32945752
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_19940 0.5kb upstream 0.5kb upstream 4436 true Chr20: 12957685-12962120 Physcomitrium patens
Pp3c20_19940 0.5kb upstream 0.5kb upstream 500 false Chr20: 12957685-12958184 Physcomitrium patens
Pp3c20_19940 0.5kb downstream 0.5kb downstream 4436 true Chr20: 12958185-12962620 Physcomitrium patens
Pp3c20_19940 0.5kb downstream 0.5kb downstream 500 false Chr20: 12962121-12962620 Physcomitrium patens
Pp3c20_19940 1.0kb upstream 1.0kb upstream 4936 true Chr20: 12957185-12962120 Physcomitrium patens
Pp3c20_19940 1.0kb upstream 1.0kb upstream 1000 false Chr20: 12957185-12958184 Physcomitrium patens
Pp3c20_19940 1.0kb downstream 1.0kb downstream 4936 true Chr20: 12958185-12963120 Physcomitrium patens
Pp3c20_19940 1.0kb downstream 1.0kb downstream 1000 false Chr20: 12962121-12963120 Physcomitrium patens
Pp3c20_19940 2.0kb upstream 2.0kb upstream 5936 true Chr20: 12956185-12962120 Physcomitrium patens
Pp3c20_19940 2.0kb upstream 2.0kb upstream 2000 false Chr20: 12956185-12958184 Physcomitrium patens
Pp3c20_19940 2.0kb downstream 2.0kb downstream 5936 true Chr20: 12958185-12964120 Physcomitrium patens
Pp3c20_19940 2.0kb downstream 2.0kb downstream 2000 false Chr20: 12962121-12964120 Physcomitrium patens
Pp3c20_19940 5.0kb upstream 5.0kb upstream 8936 true Chr20: 12953185-12962120 Physcomitrium patens
Pp3c20_19940 5.0kb upstream 5.0kb upstream 5000 false Chr20: 12953185-12958184 Physcomitrium patens
Pp3c20_19940 5.0kb downstream 5.0kb downstream 8936 true Chr20: 12958185-12967120 Physcomitrium patens
Pp3c20_19940 5.0kb downstream 5.0kb downstream 5000 false Chr20: 12962121-12967120 Physcomitrium patens
Pp3c20_19940 10.0kb upstream 10.0kb upstream 13936 true Chr20: 12948185-12962120 Physcomitrium patens
Pp3c20_19940 10.0kb upstream 10.0kb upstream 10000 false Chr20: 12948185-12958184 Physcomitrium patens
Pp3c20_19940 10.0kb downstream 10.0kb downstream 13936 true Chr20: 12958185-12972120 Physcomitrium patens
Pp3c20_19940 10.0kb downstream 10.0kb downstream 10000 false Chr20: 12962121-12972120 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121352041 5274 Embryophyte View MSA
123427421 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.807     High  
cufflinks 17.755        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.129       Low
cufflinks 10.441        
cufflinks 27.71     High  
cufflinks 9.142        
cufflinks 14.596        
cufflinks 0.041     Low Low
cufflinks 6.707        
cufflinks 40.933     High  
cufflinks 0.099       Low
cufflinks 1.484        
cufflinks 33.319     High  
cufflinks 5.368        
cufflinks 8.99        
cufflinks 7.137        
cufflinks 3.633        
cufflinks 0.481       Low
cufflinks 106.38     High High
cufflinks 4.588        
cufflinks 0.996        
cufflinks 0.101       Low
cufflinks 18.97        
cufflinks 153.742     High High
cufflinks 32.631     High  
cufflinks 3.64        
cufflinks 60.825     High High
cufflinks 82.814     High High
cufflinks 18.233        

0 Strain