Gene : Pp3c20_16700 P. patens v3.3
Defline:  (1 of 3) PTHR10943//PTHR10943:SF3 - 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT Genomic Order:  783
Name:  ? Pp3c20_16700 Secondary Identifier:  ? PAC:32945574
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_16700 0.5kb upstream 0.5kb upstream 4929 true Chr20: 10991088-10996016 Physcomitrium patens
Pp3c20_16700 0.5kb upstream 0.5kb upstream 500 false Chr20: 10995517-10996016 Physcomitrium patens
Pp3c20_16700 0.5kb downstream 0.5kb downstream 4929 true Chr20: 10990588-10995516 Physcomitrium patens
Pp3c20_16700 0.5kb downstream 0.5kb downstream 500 false Chr20: 10990588-10991087 Physcomitrium patens
Pp3c20_16700 1.0kb upstream 1.0kb upstream 5429 true Chr20: 10991088-10996516 Physcomitrium patens
Pp3c20_16700 1.0kb upstream 1.0kb upstream 1000 false Chr20: 10995517-10996516 Physcomitrium patens
Pp3c20_16700 1.0kb downstream 1.0kb downstream 5429 true Chr20: 10990088-10995516 Physcomitrium patens
Pp3c20_16700 1.0kb downstream 1.0kb downstream 1000 false Chr20: 10990088-10991087 Physcomitrium patens
Pp3c20_16700 2.0kb upstream 2.0kb upstream 6429 true Chr20: 10991088-10997516 Physcomitrium patens
Pp3c20_16700 2.0kb upstream 2.0kb upstream 2000 false Chr20: 10995517-10997516 Physcomitrium patens
Pp3c20_16700 2.0kb downstream 2.0kb downstream 6429 true Chr20: 10989088-10995516 Physcomitrium patens
Pp3c20_16700 2.0kb downstream 2.0kb downstream 2000 false Chr20: 10989088-10991087 Physcomitrium patens
Pp3c20_16700 5.0kb upstream 5.0kb upstream 9429 true Chr20: 10991088-11000516 Physcomitrium patens
Pp3c20_16700 5.0kb upstream 5.0kb upstream 5000 false Chr20: 10995517-11000516 Physcomitrium patens
Pp3c20_16700 5.0kb downstream 5.0kb downstream 9429 true Chr20: 10986088-10995516 Physcomitrium patens
Pp3c20_16700 5.0kb downstream 5.0kb downstream 5000 false Chr20: 10986088-10991087 Physcomitrium patens
Pp3c20_16700 10.0kb upstream 10.0kb upstream 14429 true Chr20: 10991088-11005516 Physcomitrium patens
Pp3c20_16700 10.0kb upstream 10.0kb upstream 10000 false Chr20: 10995517-11005516 Physcomitrium patens
Pp3c20_16700 10.0kb downstream 10.0kb downstream 14429 true Chr20: 10981088-10995516 Physcomitrium patens
Pp3c20_16700 10.0kb downstream 10.0kb downstream 10000 false Chr20: 10981088-10991087 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346928 5274 Embryophyte View MSA
123424090 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.101        
cufflinks 4.663       Low
cufflinks 10.435        
cufflinks 8.494        
cufflinks 8.905        
cufflinks 9.507        
cufflinks 9.578        
cufflinks 18.588     High High
cufflinks 10.616        
cufflinks 12.416        
cufflinks 5.811       Low
cufflinks 16.141       High
cufflinks 16.916       High
cufflinks 8.849        
cufflinks 14.414       High
cufflinks 10.656        
cufflinks 13.065        
cufflinks 8.357        
cufflinks 10.188        
cufflinks 13.764       High
cufflinks 10.895        
cufflinks 9.388        
cufflinks 10.765        
cufflinks 8.549        
cufflinks 9.143        
cufflinks 8.303        
cufflinks 11.02        
cufflinks 9.06        
cufflinks 11.963        
cufflinks 11.937        

0 Strain