Gene : Pp3c21_16540 P. patens v3.3
Defline:  (1 of 150) PF00847 - AP2 domain (AP2) Genomic Order:  782
Name:  ? Pp3c21_16540 Secondary Identifier:  ? PAC:32916762
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c21_16540 0.5kb upstream 0.5kb upstream 2114 true Chr21: 10471230-10473343 Physcomitrium patens
Pp3c21_16540 0.5kb upstream 0.5kb upstream 500 false Chr21: 10472844-10473343 Physcomitrium patens
Pp3c21_16540 0.5kb downstream 0.5kb downstream 2114 true Chr21: 10470730-10472843 Physcomitrium patens
Pp3c21_16540 0.5kb downstream 0.5kb downstream 500 false Chr21: 10470730-10471229 Physcomitrium patens
Pp3c21_16540 1.0kb upstream 1.0kb upstream 2614 true Chr21: 10471230-10473843 Physcomitrium patens
Pp3c21_16540 1.0kb upstream 1.0kb upstream 1000 false Chr21: 10472844-10473843 Physcomitrium patens
Pp3c21_16540 1.0kb downstream 1.0kb downstream 2614 true Chr21: 10470230-10472843 Physcomitrium patens
Pp3c21_16540 1.0kb downstream 1.0kb downstream 1000 false Chr21: 10470230-10471229 Physcomitrium patens
Pp3c21_16540 2.0kb upstream 2.0kb upstream 3614 true Chr21: 10471230-10474843 Physcomitrium patens
Pp3c21_16540 2.0kb upstream 2.0kb upstream 2000 false Chr21: 10472844-10474843 Physcomitrium patens
Pp3c21_16540 2.0kb downstream 2.0kb downstream 3614 true Chr21: 10469230-10472843 Physcomitrium patens
Pp3c21_16540 2.0kb downstream 2.0kb downstream 2000 false Chr21: 10469230-10471229 Physcomitrium patens
Pp3c21_16540 5.0kb upstream 5.0kb upstream 6614 true Chr21: 10471230-10477843 Physcomitrium patens
Pp3c21_16540 5.0kb upstream 5.0kb upstream 5000 false Chr21: 10472844-10477843 Physcomitrium patens
Pp3c21_16540 5.0kb downstream 5.0kb downstream 6614 true Chr21: 10466230-10472843 Physcomitrium patens
Pp3c21_16540 5.0kb downstream 5.0kb downstream 5000 false Chr21: 10466230-10471229 Physcomitrium patens
Pp3c21_16540 10.0kb upstream 10.0kb upstream 11614 true Chr21: 10471230-10482843 Physcomitrium patens
Pp3c21_16540 10.0kb upstream 10.0kb upstream 10000 false Chr21: 10472844-10482843 Physcomitrium patens
Pp3c21_16540 10.0kb downstream 10.0kb downstream 11614 true Chr21: 10461230-10472843 Physcomitrium patens
Pp3c21_16540 10.0kb downstream 10.0kb downstream 10000 false Chr21: 10461230-10471229 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343036 5274 Embryophyte View MSA
123379391 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.723        
cufflinks 16.03       High
cufflinks 3.86        
cufflinks 1.863        
cufflinks 3.649        
cufflinks 4.068        
cufflinks 10.097       High
cufflinks 2.756        
cufflinks 2.781        
cufflinks 2.22        
cufflinks 18.538     High High
cufflinks 2.12        
cufflinks 3.83        
cufflinks 2.779        
cufflinks 1.775       Low
cufflinks 36.644     High High
cufflinks 2.403        
cufflinks 2.712        
cufflinks 3.6        
cufflinks 2.19        
cufflinks 4.219        
cufflinks 6.153        
cufflinks 8.369        
cufflinks 18.318       High
cufflinks 1.574       Low
cufflinks 2.241        
cufflinks 3.087        
cufflinks 1.561       Low
cufflinks 12.029       High
cufflinks 2.125        

0 Strain