Gene : Pp3c21_5640 P. patens v3.3
Defline:  (1 of 1) PTHR35326:SF2 - PROTEIN PSBN Genomic Order:  248
Name:  ? Pp3c21_5640 Secondary Identifier:  ? PAC:32914501
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c21_5640 0.5kb upstream 0.5kb upstream 1504 true Chr21: 3472818-3474321 Physcomitrium patens
Pp3c21_5640 0.5kb upstream 0.5kb upstream 500 false Chr21: 3473822-3474321 Physcomitrium patens
Pp3c21_5640 0.5kb downstream 0.5kb downstream 1504 true Chr21: 3472318-3473821 Physcomitrium patens
Pp3c21_5640 0.5kb downstream 0.5kb downstream 500 false Chr21: 3472318-3472817 Physcomitrium patens
Pp3c21_5640 1.0kb upstream 1.0kb upstream 2004 true Chr21: 3472818-3474821 Physcomitrium patens
Pp3c21_5640 1.0kb upstream 1.0kb upstream 1000 false Chr21: 3473822-3474821 Physcomitrium patens
Pp3c21_5640 1.0kb downstream 1.0kb downstream 2004 true Chr21: 3471818-3473821 Physcomitrium patens
Pp3c21_5640 1.0kb downstream 1.0kb downstream 1000 false Chr21: 3471818-3472817 Physcomitrium patens
Pp3c21_5640 2.0kb upstream 2.0kb upstream 3004 true Chr21: 3472818-3475821 Physcomitrium patens
Pp3c21_5640 2.0kb upstream 2.0kb upstream 2000 false Chr21: 3473822-3475821 Physcomitrium patens
Pp3c21_5640 2.0kb downstream 2.0kb downstream 3004 true Chr21: 3470818-3473821 Physcomitrium patens
Pp3c21_5640 2.0kb downstream 2.0kb downstream 2000 false Chr21: 3470818-3472817 Physcomitrium patens
Pp3c21_5640 5.0kb upstream 5.0kb upstream 6004 true Chr21: 3472818-3478821 Physcomitrium patens
Pp3c21_5640 5.0kb upstream 5.0kb upstream 5000 false Chr21: 3473822-3478821 Physcomitrium patens
Pp3c21_5640 5.0kb downstream 5.0kb downstream 6004 true Chr21: 3467818-3473821 Physcomitrium patens
Pp3c21_5640 5.0kb downstream 5.0kb downstream 5000 false Chr21: 3467818-3472817 Physcomitrium patens
Pp3c21_5640 10.0kb upstream 10.0kb upstream 11004 true Chr21: 3472818-3483821 Physcomitrium patens
Pp3c21_5640 10.0kb upstream 10.0kb upstream 10000 false Chr21: 3473822-3483821 Physcomitrium patens
Pp3c21_5640 10.0kb downstream 10.0kb downstream 11004 true Chr21: 3462818-3473821 Physcomitrium patens
Pp3c21_5640 10.0kb downstream 10.0kb downstream 10000 false Chr21: 3462818-3472817 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121350730 5274 Embryophyte View MSA
123381861 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.005     Low  
cufflinks 0.011     Low  
cufflinks 0.042     Low High
cufflinks 0.003     Low  
cufflinks 0.002     Low Low
cufflinks 0.004     Low  
cufflinks 0.002     Low Low
cufflinks 0.003     Low  
cufflinks 0.003     Low  
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low Low
cufflinks 0.012     Low  
cufflinks 0.058     Low High
cufflinks 0.025     Low High
cufflinks 0.006     Low  
cufflinks 0.008     Low  
cufflinks 0.025     Low High
cufflinks 0.006     Low  
cufflinks 0.002     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.153       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.002     Low Low
cufflinks 0.002     Low Low
cufflinks 0.003     Low  
cufflinks 0.002     Low Low

0 Strain