Gene : Pp3c22_13410 P. patens v3.3
Defline:  (1 of 1) 2.1.1.191 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase / rRNA large subunit methyltransferase I Genomic Order:  607
Name:  ? Pp3c22_13410 Secondary Identifier:  ? PAC:32903686
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_13410 0.5kb upstream 0.5kb upstream 5910 true Chr22: 8815848-8821757 Physcomitrium patens
Pp3c22_13410 0.5kb upstream 0.5kb upstream 500 false Chr22: 8815848-8816347 Physcomitrium patens
Pp3c22_13410 0.5kb downstream 0.5kb downstream 5910 true Chr22: 8816348-8822257 Physcomitrium patens
Pp3c22_13410 0.5kb downstream 0.5kb downstream 500 false Chr22: 8821758-8822257 Physcomitrium patens
Pp3c22_13410 1.0kb upstream 1.0kb upstream 6410 true Chr22: 8815348-8821757 Physcomitrium patens
Pp3c22_13410 1.0kb upstream 1.0kb upstream 1000 false Chr22: 8815348-8816347 Physcomitrium patens
Pp3c22_13410 1.0kb downstream 1.0kb downstream 6410 true Chr22: 8816348-8822757 Physcomitrium patens
Pp3c22_13410 1.0kb downstream 1.0kb downstream 1000 false Chr22: 8821758-8822757 Physcomitrium patens
Pp3c22_13410 2.0kb upstream 2.0kb upstream 7410 true Chr22: 8814348-8821757 Physcomitrium patens
Pp3c22_13410 2.0kb upstream 2.0kb upstream 2000 false Chr22: 8814348-8816347 Physcomitrium patens
Pp3c22_13410 2.0kb downstream 2.0kb downstream 7410 true Chr22: 8816348-8823757 Physcomitrium patens
Pp3c22_13410 2.0kb downstream 2.0kb downstream 2000 false Chr22: 8821758-8823757 Physcomitrium patens
Pp3c22_13410 5.0kb upstream 5.0kb upstream 10410 true Chr22: 8811348-8821757 Physcomitrium patens
Pp3c22_13410 5.0kb upstream 5.0kb upstream 5000 false Chr22: 8811348-8816347 Physcomitrium patens
Pp3c22_13410 5.0kb downstream 5.0kb downstream 10410 true Chr22: 8816348-8826757 Physcomitrium patens
Pp3c22_13410 5.0kb downstream 5.0kb downstream 5000 false Chr22: 8821758-8826757 Physcomitrium patens
Pp3c22_13410 10.0kb upstream 10.0kb upstream 15410 true Chr22: 8806348-8821757 Physcomitrium patens
Pp3c22_13410 10.0kb upstream 10.0kb upstream 10000 false Chr22: 8806348-8816347 Physcomitrium patens
Pp3c22_13410 10.0kb downstream 10.0kb downstream 15410 true Chr22: 8816348-8831757 Physcomitrium patens
Pp3c22_13410 10.0kb downstream 10.0kb downstream 10000 false Chr22: 8821758-8831757 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348163 5274 Embryophyte View MSA
123426103 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.919        
cufflinks 7.721        
cufflinks 6.562        
cufflinks 9.177        
cufflinks 6.7        
cufflinks 3.894        
cufflinks 6.237        
cufflinks 0.546       Low
cufflinks 9.276        
cufflinks 6.624        
cufflinks 5.273        
cufflinks 8.67        
cufflinks 0.435       Low
cufflinks 5.214        
cufflinks 4.925        
cufflinks 2.281       Low
cufflinks 6.454        
cufflinks 6.718        
cufflinks 7.539        
cufflinks 10.874        
cufflinks 9.824        
cufflinks 5.076        
cufflinks 11.942       High
cufflinks 5.876        
cufflinks 6.654        
cufflinks 8.067        
cufflinks 5.293        
cufflinks 2.362       Low
cufflinks 10.63        
cufflinks 4.746        

0 Strain