Gene : Pp3c22_6020 P. patens v3.3
Defline:  (1 of 9) PTHR24006:SF428 - CORONATINE-INSENSITIVE PROTEIN 1 Genomic Order:  275
Name:  ? Pp3c22_6020 Secondary Identifier:  ? PAC:32903040
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_6020 0.5kb upstream 0.5kb upstream 5119 true Chr22: 3494151-3499269 Physcomitrium patens
Pp3c22_6020 0.5kb upstream 0.5kb upstream 500 false Chr22: 3494151-3494650 Physcomitrium patens
Pp3c22_6020 0.5kb downstream 0.5kb downstream 5119 true Chr22: 3494651-3499769 Physcomitrium patens
Pp3c22_6020 0.5kb downstream 0.5kb downstream 500 false Chr22: 3499270-3499769 Physcomitrium patens
Pp3c22_6020 1.0kb upstream 1.0kb upstream 5619 true Chr22: 3493651-3499269 Physcomitrium patens
Pp3c22_6020 1.0kb upstream 1.0kb upstream 1000 false Chr22: 3493651-3494650 Physcomitrium patens
Pp3c22_6020 1.0kb downstream 1.0kb downstream 5619 true Chr22: 3494651-3500269 Physcomitrium patens
Pp3c22_6020 1.0kb downstream 1.0kb downstream 1000 false Chr22: 3499270-3500269 Physcomitrium patens
Pp3c22_6020 2.0kb upstream 2.0kb upstream 6619 true Chr22: 3492651-3499269 Physcomitrium patens
Pp3c22_6020 2.0kb upstream 2.0kb upstream 2000 false Chr22: 3492651-3494650 Physcomitrium patens
Pp3c22_6020 2.0kb downstream 2.0kb downstream 6619 true Chr22: 3494651-3501269 Physcomitrium patens
Pp3c22_6020 2.0kb downstream 2.0kb downstream 2000 false Chr22: 3499270-3501269 Physcomitrium patens
Pp3c22_6020 5.0kb upstream 5.0kb upstream 9619 true Chr22: 3489651-3499269 Physcomitrium patens
Pp3c22_6020 5.0kb upstream 5.0kb upstream 5000 false Chr22: 3489651-3494650 Physcomitrium patens
Pp3c22_6020 5.0kb downstream 5.0kb downstream 9619 true Chr22: 3494651-3504269 Physcomitrium patens
Pp3c22_6020 5.0kb downstream 5.0kb downstream 5000 false Chr22: 3499270-3504269 Physcomitrium patens
Pp3c22_6020 10.0kb upstream 10.0kb upstream 14619 true Chr22: 3484651-3499269 Physcomitrium patens
Pp3c22_6020 10.0kb upstream 10.0kb upstream 10000 false Chr22: 3484651-3494650 Physcomitrium patens
Pp3c22_6020 10.0kb downstream 10.0kb downstream 14619 true Chr22: 3494651-3509269 Physcomitrium patens
Pp3c22_6020 10.0kb downstream 10.0kb downstream 10000 false Chr22: 3499270-3509269 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342352 5274 Embryophyte View MSA
123378934 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.641        
cufflinks 1.929        
cufflinks 2.777        
cufflinks 2.596        
cufflinks 0.307       Low
cufflinks 2.064        
cufflinks 2.75        
cufflinks 3.251        
cufflinks 2.189        
cufflinks 2.268        
cufflinks 2.152        
cufflinks 3.249        
cufflinks 3.712        
cufflinks 2.503        
cufflinks 1.851        
cufflinks 2.261        
cufflinks 3.218        
cufflinks 2.27        
cufflinks 1.225        
cufflinks 1.512        
cufflinks 2.775        
cufflinks 0.415       Low
cufflinks 2.417        
cufflinks 3.422        
cufflinks 4.873       High
cufflinks 2.417        
cufflinks 2.635        
cufflinks 1.782        
cufflinks 3.303        
cufflinks 1.01       Low

0 Strain