Gene : Pp3c22_7570 P. patens v3.3
Defline:  (1 of 5) PTHR10772:SF0 - 20 KDA CHAPERONIN, CHLOROPLASTIC Genomic Order:  340
Name:  ? Pp3c22_7570 Secondary Identifier:  ? PAC:32903232
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_7570 0.5kb upstream 0.5kb upstream 2187 true Chr22: 4707939-4710125 Physcomitrium patens
Pp3c22_7570 0.5kb upstream 0.5kb upstream 500 false Chr22: 4709626-4710125 Physcomitrium patens
Pp3c22_7570 0.5kb downstream 0.5kb downstream 2187 true Chr22: 4707439-4709625 Physcomitrium patens
Pp3c22_7570 0.5kb downstream 0.5kb downstream 500 false Chr22: 4707439-4707938 Physcomitrium patens
Pp3c22_7570 1.0kb upstream 1.0kb upstream 2687 true Chr22: 4707939-4710625 Physcomitrium patens
Pp3c22_7570 1.0kb upstream 1.0kb upstream 1000 false Chr22: 4709626-4710625 Physcomitrium patens
Pp3c22_7570 1.0kb downstream 1.0kb downstream 2687 true Chr22: 4706939-4709625 Physcomitrium patens
Pp3c22_7570 1.0kb downstream 1.0kb downstream 1000 false Chr22: 4706939-4707938 Physcomitrium patens
Pp3c22_7570 2.0kb upstream 2.0kb upstream 3687 true Chr22: 4707939-4711625 Physcomitrium patens
Pp3c22_7570 2.0kb upstream 2.0kb upstream 2000 false Chr22: 4709626-4711625 Physcomitrium patens
Pp3c22_7570 2.0kb downstream 2.0kb downstream 3687 true Chr22: 4705939-4709625 Physcomitrium patens
Pp3c22_7570 2.0kb downstream 2.0kb downstream 2000 false Chr22: 4705939-4707938 Physcomitrium patens
Pp3c22_7570 5.0kb upstream 5.0kb upstream 6687 true Chr22: 4707939-4714625 Physcomitrium patens
Pp3c22_7570 5.0kb upstream 5.0kb upstream 5000 false Chr22: 4709626-4714625 Physcomitrium patens
Pp3c22_7570 5.0kb downstream 5.0kb downstream 6687 true Chr22: 4702939-4709625 Physcomitrium patens
Pp3c22_7570 5.0kb downstream 5.0kb downstream 5000 false Chr22: 4702939-4707938 Physcomitrium patens
Pp3c22_7570 10.0kb upstream 10.0kb upstream 11687 true Chr22: 4707939-4719625 Physcomitrium patens
Pp3c22_7570 10.0kb upstream 10.0kb upstream 10000 false Chr22: 4709626-4719625 Physcomitrium patens
Pp3c22_7570 10.0kb downstream 10.0kb downstream 11687 true Chr22: 4697939-4709625 Physcomitrium patens
Pp3c22_7570 10.0kb downstream 10.0kb downstream 10000 false Chr22: 4697939-4707938 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344791 5274 Embryophyte View MSA
123424643 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.321        
cufflinks 4.834       High
cufflinks 0.978        
cufflinks 3.335       High
cufflinks 1.932        
cufflinks 0.05       Low
cufflinks 1.012        
cufflinks 2.02        
cufflinks 0.924        
cufflinks 0.287       Low
cufflinks 5.882       High
cufflinks 0.526        
cufflinks 0.17       Low
cufflinks 0.37        
cufflinks 0.444        
cufflinks 0.958        
cufflinks 1.147        
cufflinks 0.652        
cufflinks 9.162       High
cufflinks 1.206        
cufflinks 6.559       High
cufflinks 0.74        
cufflinks 0.405        
cufflinks 0.678        
cufflinks 0.629        
cufflinks 0.117       Low
cufflinks 0.824        
cufflinks 1.753        
cufflinks 1.667        
cufflinks 1.308        

0 Strain