Gene : Pp3c23_21610 P. patens v3.3
Defline:  (1 of 3) PTHR28661:SF1 - SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1 Genomic Order:  949
Name:  ? Pp3c23_21610 Secondary Identifier:  ? PAC:32951065
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c23_21610 0.5kb upstream 0.5kb upstream 3787 true Chr23: 14349872-14353658 Physcomitrium patens
Pp3c23_21610 0.5kb upstream 0.5kb upstream 500 false Chr23: 14353159-14353658 Physcomitrium patens
Pp3c23_21610 0.5kb downstream 0.5kb downstream 3787 true Chr23: 14349372-14353158 Physcomitrium patens
Pp3c23_21610 0.5kb downstream 0.5kb downstream 500 false Chr23: 14349372-14349871 Physcomitrium patens
Pp3c23_21610 1.0kb upstream 1.0kb upstream 4287 true Chr23: 14349872-14354158 Physcomitrium patens
Pp3c23_21610 1.0kb upstream 1.0kb upstream 1000 false Chr23: 14353159-14354158 Physcomitrium patens
Pp3c23_21610 1.0kb downstream 1.0kb downstream 4287 true Chr23: 14348872-14353158 Physcomitrium patens
Pp3c23_21610 1.0kb downstream 1.0kb downstream 1000 false Chr23: 14348872-14349871 Physcomitrium patens
Pp3c23_21610 2.0kb upstream 2.0kb upstream 5287 true Chr23: 14349872-14355158 Physcomitrium patens
Pp3c23_21610 2.0kb upstream 2.0kb upstream 2000 false Chr23: 14353159-14355158 Physcomitrium patens
Pp3c23_21610 2.0kb downstream 2.0kb downstream 5287 true Chr23: 14347872-14353158 Physcomitrium patens
Pp3c23_21610 2.0kb downstream 2.0kb downstream 2000 false Chr23: 14347872-14349871 Physcomitrium patens
Pp3c23_21610 5.0kb upstream 5.0kb upstream 8287 true Chr23: 14349872-14358158 Physcomitrium patens
Pp3c23_21610 5.0kb upstream 5.0kb upstream 5000 false Chr23: 14353159-14358158 Physcomitrium patens
Pp3c23_21610 5.0kb downstream 5.0kb downstream 8287 true Chr23: 14344872-14353158 Physcomitrium patens
Pp3c23_21610 5.0kb downstream 5.0kb downstream 5000 false Chr23: 14344872-14349871 Physcomitrium patens
Pp3c23_21610 10.0kb upstream 10.0kb upstream 13287 true Chr23: 14349872-14363158 Physcomitrium patens
Pp3c23_21610 10.0kb upstream 10.0kb upstream 10000 false Chr23: 14353159-14363158 Physcomitrium patens
Pp3c23_21610 10.0kb downstream 10.0kb downstream 13287 true Chr23: 14339872-14353158 Physcomitrium patens
Pp3c23_21610 10.0kb downstream 10.0kb downstream 10000 false Chr23: 14339872-14349871 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342757 5274 Embryophyte View MSA
123427012 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.038     Low  
cufflinks 0.039     Low  
cufflinks 0.09        
cufflinks 0.075     Low  
cufflinks 0.032     Low  
cufflinks 0.076     Low  
cufflinks 0.085        
cufflinks 0.079        
cufflinks 0.164        
cufflinks 0.25       High
cufflinks 0.072     Low  
cufflinks 0.072     Low  
cufflinks 0.087        
cufflinks 0.07     Low  
cufflinks 0.059     Low  
cufflinks 0.04     Low  
cufflinks 0.025     Low  
cufflinks 0.022     Low Low
cufflinks 0.126        
cufflinks 0.025     Low  
cufflinks 0.062     Low  
cufflinks 0.007     Low Low
cufflinks 0.088     Low  
cufflinks 0.108        
cufflinks 0.381       High
cufflinks 0.005     Low Low
cufflinks 0.077     Low  
cufflinks 0.066     Low  
cufflinks 0.019     Low Low
cufflinks 0.038     Low  

0 Strain