Gene : Pp3c23_15090 P. patens v3.3
Defline:  (1 of 1) PTHR13206 - UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN Genomic Order:  654
Name:  ? Pp3c23_15090 Secondary Identifier:  ? PAC:32949675
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c23_15090 0.5kb upstream 0.5kb upstream 6304 true Chr23: 10158351-10164654 Physcomitrium patens
Pp3c23_15090 0.5kb upstream 0.5kb upstream 500 false Chr23: 10164155-10164654 Physcomitrium patens
Pp3c23_15090 0.5kb downstream 0.5kb downstream 6304 true Chr23: 10157851-10164154 Physcomitrium patens
Pp3c23_15090 0.5kb downstream 0.5kb downstream 500 false Chr23: 10157851-10158350 Physcomitrium patens
Pp3c23_15090 1.0kb upstream 1.0kb upstream 6804 true Chr23: 10158351-10165154 Physcomitrium patens
Pp3c23_15090 1.0kb upstream 1.0kb upstream 1000 false Chr23: 10164155-10165154 Physcomitrium patens
Pp3c23_15090 1.0kb downstream 1.0kb downstream 6804 true Chr23: 10157351-10164154 Physcomitrium patens
Pp3c23_15090 1.0kb downstream 1.0kb downstream 1000 false Chr23: 10157351-10158350 Physcomitrium patens
Pp3c23_15090 2.0kb upstream 2.0kb upstream 7804 true Chr23: 10158351-10166154 Physcomitrium patens
Pp3c23_15090 2.0kb upstream 2.0kb upstream 2000 false Chr23: 10164155-10166154 Physcomitrium patens
Pp3c23_15090 2.0kb downstream 2.0kb downstream 7804 true Chr23: 10156351-10164154 Physcomitrium patens
Pp3c23_15090 2.0kb downstream 2.0kb downstream 2000 false Chr23: 10156351-10158350 Physcomitrium patens
Pp3c23_15090 5.0kb upstream 5.0kb upstream 10804 true Chr23: 10158351-10169154 Physcomitrium patens
Pp3c23_15090 5.0kb upstream 5.0kb upstream 5000 false Chr23: 10164155-10169154 Physcomitrium patens
Pp3c23_15090 5.0kb downstream 5.0kb downstream 10804 true Chr23: 10153351-10164154 Physcomitrium patens
Pp3c23_15090 5.0kb downstream 5.0kb downstream 5000 false Chr23: 10153351-10158350 Physcomitrium patens
Pp3c23_15090 10.0kb upstream 10.0kb upstream 15804 true Chr23: 10158351-10174154 Physcomitrium patens
Pp3c23_15090 10.0kb upstream 10.0kb upstream 10000 false Chr23: 10164155-10174154 Physcomitrium patens
Pp3c23_15090 10.0kb downstream 10.0kb downstream 15804 true Chr23: 10148351-10164154 Physcomitrium patens
Pp3c23_15090 10.0kb downstream 10.0kb downstream 10000 false Chr23: 10148351-10158350 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344260 5274 Embryophyte View MSA
123423854 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.673        
cufflinks 33.791     High  
cufflinks 42.141     High  
cufflinks 29.687     High  
cufflinks 9.834       Low
cufflinks 30.714     High  
cufflinks 62.77     High High
cufflinks 44.858     High High
cufflinks 35.872     High  
cufflinks 27.949     High  
cufflinks 19.138     High  
cufflinks 9.662       Low
cufflinks 30.134     High  
cufflinks 19.452     High  
cufflinks 22.299     High  
cufflinks 18.996     High  
cufflinks 38.43     High  
cufflinks 26.609     High  
cufflinks 16.331        
cufflinks 32.457     High  
cufflinks 24.952     High  
cufflinks 32.153     High  
cufflinks 26.382     High  
cufflinks 12.849        
cufflinks 17.625        
cufflinks 24.686     High  
cufflinks 1.848       Low
cufflinks 32.24     High  
cufflinks 28.856     High  
cufflinks 24.796     High  

0 Strain