Gene : Pp3c23_890 P. patens v3.3
Defline:  (1 of 1) 6.3.2.8 - UDP-N-acetylmuramate--L-alanine ligase / Uridine-diphosphate-N-acetylmuramate:L-alanine ligase Genomic Order:  32
Name:  ? Pp3c23_890 Secondary Identifier:  ? PAC:32949122
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c23_890 0.5kb upstream 0.5kb upstream 6155 true Chr23: 488814-494968 Physcomitrium patens
Pp3c23_890 0.5kb upstream 0.5kb upstream 500 false Chr23: 488814-489313 Physcomitrium patens
Pp3c23_890 0.5kb downstream 0.5kb downstream 6155 true Chr23: 489314-495468 Physcomitrium patens
Pp3c23_890 0.5kb downstream 0.5kb downstream 500 false Chr23: 494969-495468 Physcomitrium patens
Pp3c23_890 1.0kb upstream 1.0kb upstream 6655 true Chr23: 488314-494968 Physcomitrium patens
Pp3c23_890 1.0kb upstream 1.0kb upstream 1000 false Chr23: 488314-489313 Physcomitrium patens
Pp3c23_890 1.0kb downstream 1.0kb downstream 6655 true Chr23: 489314-495968 Physcomitrium patens
Pp3c23_890 1.0kb downstream 1.0kb downstream 1000 false Chr23: 494969-495968 Physcomitrium patens
Pp3c23_890 2.0kb upstream 2.0kb upstream 7655 true Chr23: 487314-494968 Physcomitrium patens
Pp3c23_890 2.0kb upstream 2.0kb upstream 2000 false Chr23: 487314-489313 Physcomitrium patens
Pp3c23_890 2.0kb downstream 2.0kb downstream 7655 true Chr23: 489314-496968 Physcomitrium patens
Pp3c23_890 2.0kb downstream 2.0kb downstream 2000 false Chr23: 494969-496968 Physcomitrium patens
Pp3c23_890 5.0kb upstream 5.0kb upstream 10655 true Chr23: 484314-494968 Physcomitrium patens
Pp3c23_890 5.0kb upstream 5.0kb upstream 5000 false Chr23: 484314-489313 Physcomitrium patens
Pp3c23_890 5.0kb downstream 5.0kb downstream 10655 true Chr23: 489314-499968 Physcomitrium patens
Pp3c23_890 5.0kb downstream 5.0kb downstream 5000 false Chr23: 494969-499968 Physcomitrium patens
Pp3c23_890 10.0kb upstream 10.0kb upstream 15655 true Chr23: 479314-494968 Physcomitrium patens
Pp3c23_890 10.0kb upstream 10.0kb upstream 10000 false Chr23: 479314-489313 Physcomitrium patens
Pp3c23_890 10.0kb downstream 10.0kb downstream 15655 true Chr23: 489314-504968 Physcomitrium patens
Pp3c23_890 10.0kb downstream 10.0kb downstream 10000 false Chr23: 494969-504968 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348625 5274 Embryophyte View MSA
123380945 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 66.701     High  
cufflinks 105.745     High  
cufflinks 66.976     High  
cufflinks 57.819     High  
cufflinks 79.093     High  
cufflinks 101.453     High  
cufflinks 105.343     High  
cufflinks 11.052       Low
cufflinks 103.583     High  
cufflinks 64.16     High  
cufflinks 93.052     High  
cufflinks 38.749     High  
cufflinks 93.313     High  
cufflinks 89.105     High  
cufflinks 49.607     High  
cufflinks 68.717     High  
cufflinks 83.439     High  
cufflinks 50.835     High  
cufflinks 89.692     High  
cufflinks 109.779     High  
cufflinks 94.74     High  
cufflinks 41.236     High  
cufflinks 96.422     High  
cufflinks 10.097       Low
cufflinks 57.896     High  
cufflinks 69.199     High  
cufflinks 131.477     High High
cufflinks 92.824     High  
cufflinks 38.98     High  
cufflinks 54.003     High  

0 Strain