Gene : Pp3c24_8280 P. patens v3.3
Defline:  (1 of 1) PTHR11271:SF6 - GUANINE DEAMINASE Genomic Order:  362
Name:  ? Pp3c24_8280 Secondary Identifier:  ? PAC:32910196
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-6606 Physcomitrium patens pathologic  
Ppatens PWY-6608 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c24_8280 0.5kb upstream 0.5kb upstream 2892 true Chr24: 5521554-5524445 Physcomitrium patens
Pp3c24_8280 0.5kb upstream 0.5kb upstream 500 false Chr24: 5523946-5524445 Physcomitrium patens
Pp3c24_8280 0.5kb downstream 0.5kb downstream 2892 true Chr24: 5521054-5523945 Physcomitrium patens
Pp3c24_8280 0.5kb downstream 0.5kb downstream 500 false Chr24: 5521054-5521553 Physcomitrium patens
Pp3c24_8280 1.0kb upstream 1.0kb upstream 3392 true Chr24: 5521554-5524945 Physcomitrium patens
Pp3c24_8280 1.0kb upstream 1.0kb upstream 1000 false Chr24: 5523946-5524945 Physcomitrium patens
Pp3c24_8280 1.0kb downstream 1.0kb downstream 3392 true Chr24: 5520554-5523945 Physcomitrium patens
Pp3c24_8280 1.0kb downstream 1.0kb downstream 1000 false Chr24: 5520554-5521553 Physcomitrium patens
Pp3c24_8280 2.0kb upstream 2.0kb upstream 4392 true Chr24: 5521554-5525945 Physcomitrium patens
Pp3c24_8280 2.0kb upstream 2.0kb upstream 2000 false Chr24: 5523946-5525945 Physcomitrium patens
Pp3c24_8280 2.0kb downstream 2.0kb downstream 4392 true Chr24: 5519554-5523945 Physcomitrium patens
Pp3c24_8280 2.0kb downstream 2.0kb downstream 2000 false Chr24: 5519554-5521553 Physcomitrium patens
Pp3c24_8280 5.0kb upstream 5.0kb upstream 7392 true Chr24: 5521554-5528945 Physcomitrium patens
Pp3c24_8280 5.0kb upstream 5.0kb upstream 5000 false Chr24: 5523946-5528945 Physcomitrium patens
Pp3c24_8280 5.0kb downstream 5.0kb downstream 7392 true Chr24: 5516554-5523945 Physcomitrium patens
Pp3c24_8280 5.0kb downstream 5.0kb downstream 5000 false Chr24: 5516554-5521553 Physcomitrium patens
Pp3c24_8280 10.0kb upstream 10.0kb upstream 12392 true Chr24: 5521554-5533945 Physcomitrium patens
Pp3c24_8280 10.0kb upstream 10.0kb upstream 10000 false Chr24: 5523946-5533945 Physcomitrium patens
Pp3c24_8280 10.0kb downstream 10.0kb downstream 12392 true Chr24: 5511554-5523945 Physcomitrium patens
Pp3c24_8280 10.0kb downstream 10.0kb downstream 10000 false Chr24: 5511554-5521553 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121326376 5274 Embryophyte Singleton cluster - no MSA
123427164 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.562        
cufflinks 0.328       Low
cufflinks 2.347        
cufflinks 3.055        
cufflinks 3.263        
cufflinks 3.65        
cufflinks 2.798        
cufflinks 1.8        
cufflinks 0.549       Low
cufflinks 2.616        
cufflinks 1.705        
cufflinks 5.317       High
cufflinks 0.243       Low
cufflinks 1.837        
cufflinks 2.138        
cufflinks 3.262        
cufflinks 2.529        
cufflinks 2.363        
cufflinks 1.22        
cufflinks 0.134       Low
cufflinks 2.375        
cufflinks 0.966        
cufflinks 1.092        
cufflinks 0.127       Low
cufflinks 3.154        
cufflinks 1.029        
cufflinks 1.721        
cufflinks 3.418        
cufflinks 4.669       High
cufflinks 0.937        

0 Strain