Gene : Pp3c25_1540 P. patens v3.3
Defline:  (1 of 1) KOG3706 - Uncharacterized conserved protein Genomic Order:  87
Name:  ? Pp3c25_1540 Secondary Identifier:  ? PAC:32979457
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c25_1540 0.5kb upstream 0.5kb upstream 3192 true Chr25: 970204-973395 Physcomitrium patens
Pp3c25_1540 0.5kb upstream 0.5kb upstream 500 false Chr25: 972896-973395 Physcomitrium patens
Pp3c25_1540 0.5kb downstream 0.5kb downstream 3192 true Chr25: 969704-972895 Physcomitrium patens
Pp3c25_1540 0.5kb downstream 0.5kb downstream 500 false Chr25: 969704-970203 Physcomitrium patens
Pp3c25_1540 1.0kb upstream 1.0kb upstream 3692 true Chr25: 970204-973895 Physcomitrium patens
Pp3c25_1540 1.0kb upstream 1.0kb upstream 1000 false Chr25: 972896-973895 Physcomitrium patens
Pp3c25_1540 1.0kb downstream 1.0kb downstream 3692 true Chr25: 969204-972895 Physcomitrium patens
Pp3c25_1540 1.0kb downstream 1.0kb downstream 1000 false Chr25: 969204-970203 Physcomitrium patens
Pp3c25_1540 2.0kb upstream 2.0kb upstream 4692 true Chr25: 970204-974895 Physcomitrium patens
Pp3c25_1540 2.0kb upstream 2.0kb upstream 2000 false Chr25: 972896-974895 Physcomitrium patens
Pp3c25_1540 2.0kb downstream 2.0kb downstream 4692 true Chr25: 968204-972895 Physcomitrium patens
Pp3c25_1540 2.0kb downstream 2.0kb downstream 2000 false Chr25: 968204-970203 Physcomitrium patens
Pp3c25_1540 5.0kb upstream 5.0kb upstream 7692 true Chr25: 970204-977895 Physcomitrium patens
Pp3c25_1540 5.0kb upstream 5.0kb upstream 5000 false Chr25: 972896-977895 Physcomitrium patens
Pp3c25_1540 5.0kb downstream 5.0kb downstream 7692 true Chr25: 965204-972895 Physcomitrium patens
Pp3c25_1540 5.0kb downstream 5.0kb downstream 5000 false Chr25: 965204-970203 Physcomitrium patens
Pp3c25_1540 10.0kb upstream 10.0kb upstream 12692 true Chr25: 970204-982895 Physcomitrium patens
Pp3c25_1540 10.0kb upstream 10.0kb upstream 10000 false Chr25: 972896-982895 Physcomitrium patens
Pp3c25_1540 10.0kb downstream 10.0kb downstream 12692 true Chr25: 960204-972895 Physcomitrium patens
Pp3c25_1540 10.0kb downstream 10.0kb downstream 10000 false Chr25: 960204-970203 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343075 5274 Embryophyte View MSA
123428618 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 54.62     High Low
cufflinks 35.861     High Low
cufflinks 42.331     High Low
cufflinks 80.149     High  
cufflinks 122.886     High  
cufflinks 170.783     High High
cufflinks 116.378     High  
cufflinks 45.387     High Low
cufflinks 134.757     High  
cufflinks 130.799     High  
cufflinks 144.013     High High
cufflinks 80.989     High  
cufflinks 69.864     High  
cufflinks 80.097     High  
cufflinks 83.041     High  
cufflinks 122.43     High  
cufflinks 135.534     High  
cufflinks 95.475     High  
cufflinks 125.886     High  
cufflinks 105.11     High  
cufflinks 127.24     High  
cufflinks 116.108     High  
cufflinks 111.231     High  
cufflinks 88.418     High  
cufflinks 56.798     High Low
cufflinks 65.351     High  
cufflinks 121.58     High  
cufflinks 110.692     High  
cufflinks 83.979     High  
cufflinks 54.242     High Low

0 Strain