Gene : Pp3c26_11060 P. patens v3.3
Defline:  (1 of 7) PF00487//PF11960 - Fatty acid desaturase (FA_desaturase) // Domain of unknown function (DUF3474) (DUF3474) Genomic Order:  505
Name:  ? Pp3c26_11060 Secondary Identifier:  ? PAC:32918483
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c26_11060 0.5kb upstream 0.5kb upstream 1765 true Chr26: 6929473-6931237 Physcomitrium patens
Pp3c26_11060 0.5kb upstream 0.5kb upstream 500 false Chr26: 6930738-6931237 Physcomitrium patens
Pp3c26_11060 0.5kb downstream 0.5kb downstream 1765 true Chr26: 6928973-6930737 Physcomitrium patens
Pp3c26_11060 0.5kb downstream 0.5kb downstream 500 false Chr26: 6928973-6929472 Physcomitrium patens
Pp3c26_11060 1.0kb upstream 1.0kb upstream 2265 true Chr26: 6929473-6931737 Physcomitrium patens
Pp3c26_11060 1.0kb upstream 1.0kb upstream 1000 false Chr26: 6930738-6931737 Physcomitrium patens
Pp3c26_11060 1.0kb downstream 1.0kb downstream 2265 true Chr26: 6928473-6930737 Physcomitrium patens
Pp3c26_11060 1.0kb downstream 1.0kb downstream 1000 false Chr26: 6928473-6929472 Physcomitrium patens
Pp3c26_11060 2.0kb upstream 2.0kb upstream 3265 true Chr26: 6929473-6932737 Physcomitrium patens
Pp3c26_11060 2.0kb upstream 2.0kb upstream 2000 false Chr26: 6930738-6932737 Physcomitrium patens
Pp3c26_11060 2.0kb downstream 2.0kb downstream 3265 true Chr26: 6927473-6930737 Physcomitrium patens
Pp3c26_11060 2.0kb downstream 2.0kb downstream 2000 false Chr26: 6927473-6929472 Physcomitrium patens
Pp3c26_11060 5.0kb upstream 5.0kb upstream 6265 true Chr26: 6929473-6935737 Physcomitrium patens
Pp3c26_11060 5.0kb upstream 5.0kb upstream 5000 false Chr26: 6930738-6935737 Physcomitrium patens
Pp3c26_11060 5.0kb downstream 5.0kb downstream 6265 true Chr26: 6924473-6930737 Physcomitrium patens
Pp3c26_11060 5.0kb downstream 5.0kb downstream 5000 false Chr26: 6924473-6929472 Physcomitrium patens
Pp3c26_11060 10.0kb upstream 10.0kb upstream 11265 true Chr26: 6929473-6940737 Physcomitrium patens
Pp3c26_11060 10.0kb upstream 10.0kb upstream 10000 false Chr26: 6930738-6940737 Physcomitrium patens
Pp3c26_11060 10.0kb downstream 10.0kb downstream 11265 true Chr26: 6919473-6930737 Physcomitrium patens
Pp3c26_11060 10.0kb downstream 10.0kb downstream 10000 false Chr26: 6919473-6929472 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351532 5274 Embryophyte View MSA
123426688 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.034     Low  
cufflinks 0.015     Low  
cufflinks 0.004     Low  
cufflinks 0.01     Low  
cufflinks 0.305        
cufflinks 0.062     Low  
cufflinks 0.007     Low  
cufflinks 0.151        
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.055     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.003     Low  
cufflinks 0.009     Low  
cufflinks 0.004     Low  
cufflinks 0.008     Low  
cufflinks 0.009     Low  
cufflinks 0.013     Low  
cufflinks 0.008     Low  
cufflinks 0.455        
cufflinks 0.01     Low  
cufflinks 0.012     Low  
cufflinks 141.86     High High
cufflinks 0.041     Low  
cufflinks 0.005     Low  
cufflinks 0.666       High
cufflinks 0.697       High
cufflinks 0.0     Not Expressed Not Expressed

0 Strain