Gene : Pp3c27_4630 P. patens v3.3
Defline:  (1 of 17) PTHR24115:SF417 - PHRAGMOPLAST ORIENTING KINESIN-1 Genomic Order:  228
Name:  ? Pp3c27_4630 Secondary Identifier:  ? PAC:32951421
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c27_4630 0.5kb upstream 0.5kb upstream 16843 true Chr27: 2677521-2694363 Physcomitrium patens
Pp3c27_4630 0.5kb upstream 0.5kb upstream 500 false Chr27: 2693864-2694363 Physcomitrium patens
Pp3c27_4630 0.5kb downstream 0.5kb downstream 16843 true Chr27: 2677021-2693863 Physcomitrium patens
Pp3c27_4630 0.5kb downstream 0.5kb downstream 500 false Chr27: 2677021-2677520 Physcomitrium patens
Pp3c27_4630 1.0kb upstream 1.0kb upstream 17343 true Chr27: 2677521-2694863 Physcomitrium patens
Pp3c27_4630 1.0kb upstream 1.0kb upstream 1000 false Chr27: 2693864-2694863 Physcomitrium patens
Pp3c27_4630 1.0kb downstream 1.0kb downstream 17343 true Chr27: 2676521-2693863 Physcomitrium patens
Pp3c27_4630 1.0kb downstream 1.0kb downstream 1000 false Chr27: 2676521-2677520 Physcomitrium patens
Pp3c27_4630 2.0kb upstream 2.0kb upstream 18343 true Chr27: 2677521-2695863 Physcomitrium patens
Pp3c27_4630 2.0kb upstream 2.0kb upstream 2000 false Chr27: 2693864-2695863 Physcomitrium patens
Pp3c27_4630 2.0kb downstream 2.0kb downstream 18343 true Chr27: 2675521-2693863 Physcomitrium patens
Pp3c27_4630 2.0kb downstream 2.0kb downstream 2000 false Chr27: 2675521-2677520 Physcomitrium patens
Pp3c27_4630 5.0kb upstream 5.0kb upstream 21343 true Chr27: 2677521-2698863 Physcomitrium patens
Pp3c27_4630 5.0kb upstream 5.0kb upstream 5000 false Chr27: 2693864-2698863 Physcomitrium patens
Pp3c27_4630 5.0kb downstream 5.0kb downstream 21343 true Chr27: 2672521-2693863 Physcomitrium patens
Pp3c27_4630 5.0kb downstream 5.0kb downstream 5000 false Chr27: 2672521-2677520 Physcomitrium patens
Pp3c27_4630 10.0kb upstream 10.0kb upstream 26343 true Chr27: 2677521-2703863 Physcomitrium patens
Pp3c27_4630 10.0kb upstream 10.0kb upstream 10000 false Chr27: 2693864-2703863 Physcomitrium patens
Pp3c27_4630 10.0kb downstream 10.0kb downstream 26343 true Chr27: 2667521-2693863 Physcomitrium patens
Pp3c27_4630 10.0kb downstream 10.0kb downstream 10000 false Chr27: 2667521-2677520 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429039 5275 Viridiplantae View MSA
121350480 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.565        
cufflinks 0.765        
cufflinks 0.526        
cufflinks 0.365        
cufflinks 0.008     Low Low
cufflinks 0.471        
cufflinks 0.126        
cufflinks 1.642       High
cufflinks 0.012     Low Low
cufflinks 0.67        
cufflinks 0.076     Low  
cufflinks 0.047     Low Low
cufflinks 0.102        
cufflinks 0.038     Low Low
cufflinks 0.34        
cufflinks 0.675        
cufflinks 0.637        
cufflinks 0.975        
cufflinks 1.621       High
cufflinks 0.634        
cufflinks 1.229        
cufflinks 0.024     Low Low
cufflinks 0.893        
cufflinks 0.713        
cufflinks 0.109        
cufflinks 0.702        
cufflinks 0.426        
cufflinks 1.413       High
cufflinks 1.926       High
cufflinks 0.327        

0 Strain