Gene : Pp3s30_1010 P. patens v3.3
Defline:  (1 of 1) 2.5.1.78//2.5.1.9//3.5.4.25 - 6,7-dimethyl-8-ribityllumazine synthase / Lumazine synthase // Genomic Order:  105
Name:  ? Pp3s30_1010 Secondary Identifier:  ? PAC:32948441
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens RIBOSYN2-PWY Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3s30_1010 0.5kb upstream 0.5kb upstream 7966 true scaffold_30: 244415-252380 Physcomitrium patens
Pp3s30_1010 0.5kb upstream 0.5kb upstream 500 false scaffold_30: 251881-252380 Physcomitrium patens
Pp3s30_1010 0.5kb downstream 0.5kb downstream 7966 true scaffold_30: 243915-251880 Physcomitrium patens
Pp3s30_1010 0.5kb downstream 0.5kb downstream 500 false scaffold_30: 243915-244414 Physcomitrium patens
Pp3s30_1010 1.0kb upstream 1.0kb upstream 8466 true scaffold_30: 244415-252880 Physcomitrium patens
Pp3s30_1010 1.0kb upstream 1.0kb upstream 1000 false scaffold_30: 251881-252880 Physcomitrium patens
Pp3s30_1010 1.0kb downstream 1.0kb downstream 8466 true scaffold_30: 243415-251880 Physcomitrium patens
Pp3s30_1010 1.0kb downstream 1.0kb downstream 1000 false scaffold_30: 243415-244414 Physcomitrium patens
Pp3s30_1010 2.0kb upstream 2.0kb upstream 9466 true scaffold_30: 244415-253880 Physcomitrium patens
Pp3s30_1010 2.0kb upstream 2.0kb upstream 2000 false scaffold_30: 251881-253880 Physcomitrium patens
Pp3s30_1010 2.0kb downstream 2.0kb downstream 9466 true scaffold_30: 242415-251880 Physcomitrium patens
Pp3s30_1010 2.0kb downstream 2.0kb downstream 2000 false scaffold_30: 242415-244414 Physcomitrium patens
Pp3s30_1010 5.0kb upstream 5.0kb upstream 12466 true scaffold_30: 244415-256880 Physcomitrium patens
Pp3s30_1010 5.0kb upstream 5.0kb upstream 5000 false scaffold_30: 251881-256880 Physcomitrium patens
Pp3s30_1010 5.0kb downstream 5.0kb downstream 12466 true scaffold_30: 239415-251880 Physcomitrium patens
Pp3s30_1010 5.0kb downstream 5.0kb downstream 5000 false scaffold_30: 239415-244414 Physcomitrium patens
Pp3s30_1010 10.0kb upstream 10.0kb upstream 17466 true scaffold_30: 244415-261880 Physcomitrium patens
Pp3s30_1010 10.0kb upstream 10.0kb upstream 10000 false scaffold_30: 251881-261880 Physcomitrium patens
Pp3s30_1010 10.0kb downstream 10.0kb downstream 17466 true scaffold_30: 234415-251880 Physcomitrium patens
Pp3s30_1010 10.0kb downstream 10.0kb downstream 10000 false scaffold_30: 234415-244414 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121331413 5274 Embryophyte Singleton cluster - no MSA
123368348 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain