Gene : Pp3c1_27300 P. patens v3.3
Defline:  (1 of 2) PF00072//PF08447 - Response regulator receiver domain (Response_reg) // PAS fold (PAS_3) Genomic Order:  1292
Name:  ? Pp3c1_27300 Secondary Identifier:  ? PAC:32969182
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_27300 0.5kb upstream 0.5kb upstream 4247 true Chr01: 19666869-19671115 Physcomitrium patens
Pp3c1_27300 0.5kb upstream 0.5kb upstream 500 false Chr01: 19666869-19667368 Physcomitrium patens
Pp3c1_27300 0.5kb downstream 0.5kb downstream 4247 true Chr01: 19667369-19671615 Physcomitrium patens
Pp3c1_27300 0.5kb downstream 0.5kb downstream 500 false Chr01: 19671116-19671615 Physcomitrium patens
Pp3c1_27300 1.0kb upstream 1.0kb upstream 4747 true Chr01: 19666369-19671115 Physcomitrium patens
Pp3c1_27300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 19666369-19667368 Physcomitrium patens
Pp3c1_27300 1.0kb downstream 1.0kb downstream 4747 true Chr01: 19667369-19672115 Physcomitrium patens
Pp3c1_27300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 19671116-19672115 Physcomitrium patens
Pp3c1_27300 2.0kb upstream 2.0kb upstream 5747 true Chr01: 19665369-19671115 Physcomitrium patens
Pp3c1_27300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 19665369-19667368 Physcomitrium patens
Pp3c1_27300 2.0kb downstream 2.0kb downstream 5747 true Chr01: 19667369-19673115 Physcomitrium patens
Pp3c1_27300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 19671116-19673115 Physcomitrium patens
Pp3c1_27300 5.0kb upstream 5.0kb upstream 8747 true Chr01: 19662369-19671115 Physcomitrium patens
Pp3c1_27300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 19662369-19667368 Physcomitrium patens
Pp3c1_27300 5.0kb downstream 5.0kb downstream 8747 true Chr01: 19667369-19676115 Physcomitrium patens
Pp3c1_27300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 19671116-19676115 Physcomitrium patens
Pp3c1_27300 10.0kb upstream 10.0kb upstream 13747 true Chr01: 19657369-19671115 Physcomitrium patens
Pp3c1_27300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 19657369-19667368 Physcomitrium patens
Pp3c1_27300 10.0kb downstream 10.0kb downstream 13747 true Chr01: 19667369-19681115 Physcomitrium patens
Pp3c1_27300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 19671116-19681115 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121333980 5274 Embryophyte Singleton cluster - no MSA
123370864 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.78     High  
cufflinks 48.241     High  
cufflinks 28.74     High  
cufflinks 22.021     High  
cufflinks 36.726     High  
cufflinks 41.027     High  
cufflinks 5.591       Low
cufflinks 46.23     High  
cufflinks 5.178       Low
cufflinks 22.797     High  
cufflinks 46.236     High  
cufflinks 11.162       Low
cufflinks 46.588     High  
cufflinks 16.613        
cufflinks 10.996       Low
cufflinks 20.408     High  
cufflinks 59.1     High High
cufflinks 35.984     High  
cufflinks 41.753     High  
cufflinks 51.193     High  
cufflinks 42.831     High  
cufflinks 35.882     High  
cufflinks 8.731       Low
cufflinks 48.633     High  
cufflinks 7.938       Low
cufflinks 59.743     High High
cufflinks 76.701     High High
cufflinks 37.433     High  
cufflinks 16.921        
cufflinks 11.079       Low

0 Strain