Gene : Pp3c2_17450 P. patens v3.3
Defline:  (1 of 1) PTHR36738:SF1 - EXPRESSED PROTEIN Genomic Order:  887
Name:  ? Pp3c2_17450 Secondary Identifier:  ? PAC:32934054
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c2_17450 0.5kb upstream 0.5kb upstream 2714 true Chr02: 11518510-11521223 Physcomitrium patens
Pp3c2_17450 0.5kb upstream 0.5kb upstream 500 false Chr02: 11520724-11521223 Physcomitrium patens
Pp3c2_17450 0.5kb downstream 0.5kb downstream 2714 true Chr02: 11518010-11520723 Physcomitrium patens
Pp3c2_17450 0.5kb downstream 0.5kb downstream 500 false Chr02: 11518010-11518509 Physcomitrium patens
Pp3c2_17450 1.0kb upstream 1.0kb upstream 3214 true Chr02: 11518510-11521723 Physcomitrium patens
Pp3c2_17450 1.0kb upstream 1.0kb upstream 1000 false Chr02: 11520724-11521723 Physcomitrium patens
Pp3c2_17450 1.0kb downstream 1.0kb downstream 3214 true Chr02: 11517510-11520723 Physcomitrium patens
Pp3c2_17450 1.0kb downstream 1.0kb downstream 1000 false Chr02: 11517510-11518509 Physcomitrium patens
Pp3c2_17450 2.0kb upstream 2.0kb upstream 4214 true Chr02: 11518510-11522723 Physcomitrium patens
Pp3c2_17450 2.0kb upstream 2.0kb upstream 2000 false Chr02: 11520724-11522723 Physcomitrium patens
Pp3c2_17450 2.0kb downstream 2.0kb downstream 4214 true Chr02: 11516510-11520723 Physcomitrium patens
Pp3c2_17450 2.0kb downstream 2.0kb downstream 2000 false Chr02: 11516510-11518509 Physcomitrium patens
Pp3c2_17450 5.0kb upstream 5.0kb upstream 7214 true Chr02: 11518510-11525723 Physcomitrium patens
Pp3c2_17450 5.0kb upstream 5.0kb upstream 5000 false Chr02: 11520724-11525723 Physcomitrium patens
Pp3c2_17450 5.0kb downstream 5.0kb downstream 7214 true Chr02: 11513510-11520723 Physcomitrium patens
Pp3c2_17450 5.0kb downstream 5.0kb downstream 5000 false Chr02: 11513510-11518509 Physcomitrium patens
Pp3c2_17450 10.0kb upstream 10.0kb upstream 12214 true Chr02: 11518510-11530723 Physcomitrium patens
Pp3c2_17450 10.0kb upstream 10.0kb upstream 10000 false Chr02: 11520724-11530723 Physcomitrium patens
Pp3c2_17450 10.0kb downstream 10.0kb downstream 12214 true Chr02: 11508510-11520723 Physcomitrium patens
Pp3c2_17450 10.0kb downstream 10.0kb downstream 10000 false Chr02: 11508510-11518509 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347775 5274 Embryophyte View MSA
123423846 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.234        
cufflinks 0.32       Low
cufflinks 2.072        
cufflinks 5.92       High
cufflinks 0.482        
cufflinks 8.807       High
cufflinks 1.42        
cufflinks 0.089       Low
cufflinks 4.551        
cufflinks 3.794        
cufflinks 1.256        
cufflinks 0.496        
cufflinks 4.415        
cufflinks 5.074        
cufflinks 6.544       High
cufflinks 4.365        
cufflinks 7.178       High
cufflinks 0.937        
cufflinks 7.325       High
cufflinks 0.831        
cufflinks 2.893        
cufflinks 0.07       Low
cufflinks 0.937        
cufflinks 0.752        
cufflinks 1.418        
cufflinks 0.271       Low
cufflinks 0.984        
cufflinks 2.442        
cufflinks 1.375        
cufflinks 1.822        

0 Strain