Gene : Pp3c2_3460 P. patens v3.3
Defline:  (1 of 2) PTHR10796:SF117 - PATCHED FAMILY PROTEIN Genomic Order:  185
Name:  ? Pp3c2_3460 Secondary Identifier:  ? PAC:32934773
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c2_3460 0.5kb upstream 0.5kb upstream 14034 true Chr02: 2190872-2204905 Physcomitrium patens
Pp3c2_3460 0.5kb upstream 0.5kb upstream 500 false Chr02: 2204406-2204905 Physcomitrium patens
Pp3c2_3460 0.5kb downstream 0.5kb downstream 14034 true Chr02: 2190372-2204405 Physcomitrium patens
Pp3c2_3460 0.5kb downstream 0.5kb downstream 500 false Chr02: 2190372-2190871 Physcomitrium patens
Pp3c2_3460 1.0kb upstream 1.0kb upstream 14534 true Chr02: 2190872-2205405 Physcomitrium patens
Pp3c2_3460 1.0kb upstream 1.0kb upstream 1000 false Chr02: 2204406-2205405 Physcomitrium patens
Pp3c2_3460 1.0kb downstream 1.0kb downstream 14534 true Chr02: 2189872-2204405 Physcomitrium patens
Pp3c2_3460 1.0kb downstream 1.0kb downstream 1000 false Chr02: 2189872-2190871 Physcomitrium patens
Pp3c2_3460 2.0kb upstream 2.0kb upstream 15534 true Chr02: 2190872-2206405 Physcomitrium patens
Pp3c2_3460 2.0kb upstream 2.0kb upstream 2000 false Chr02: 2204406-2206405 Physcomitrium patens
Pp3c2_3460 2.0kb downstream 2.0kb downstream 15534 true Chr02: 2188872-2204405 Physcomitrium patens
Pp3c2_3460 2.0kb downstream 2.0kb downstream 2000 false Chr02: 2188872-2190871 Physcomitrium patens
Pp3c2_3460 5.0kb upstream 5.0kb upstream 18534 true Chr02: 2190872-2209405 Physcomitrium patens
Pp3c2_3460 5.0kb upstream 5.0kb upstream 5000 false Chr02: 2204406-2209405 Physcomitrium patens
Pp3c2_3460 5.0kb downstream 5.0kb downstream 18534 true Chr02: 2185872-2204405 Physcomitrium patens
Pp3c2_3460 5.0kb downstream 5.0kb downstream 5000 false Chr02: 2185872-2190871 Physcomitrium patens
Pp3c2_3460 10.0kb upstream 10.0kb upstream 23534 true Chr02: 2190872-2214405 Physcomitrium patens
Pp3c2_3460 10.0kb upstream 10.0kb upstream 10000 false Chr02: 2204406-2214405 Physcomitrium patens
Pp3c2_3460 10.0kb downstream 10.0kb downstream 23534 true Chr02: 2180872-2204405 Physcomitrium patens
Pp3c2_3460 10.0kb downstream 10.0kb downstream 10000 false Chr02: 2180872-2190871 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429105 5275 Viridiplantae View MSA
121349896 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.069       Low
cufflinks 2.172        
cufflinks 3.825        
cufflinks 3.642        
cufflinks 15.802       High
cufflinks 6.555        
cufflinks 5.684        
cufflinks 27.08     High High
cufflinks 0.514       Low
cufflinks 4.397        
cufflinks 6.357        
cufflinks 18.726       High
cufflinks 4.275        
cufflinks 3.674        
cufflinks 9.954        
cufflinks 3.75        
cufflinks 1.788       Low
cufflinks 3.498        
cufflinks 8.381        
cufflinks 3.249        
cufflinks 0.524       Low
cufflinks 9.307        
cufflinks 3.41        
cufflinks 16.669       High
cufflinks 4.458        
cufflinks 3.579        
cufflinks 26.705     High High
cufflinks 4.929        
cufflinks 3.936        
cufflinks 3.692        

0 Strain